Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45471 | Canola | cytosol | 94.35 | 95.62 |
| Bra027005.1-P | Field mustard | cytosol | 94.02 | 95.29 |
| CDY45969 | Canola | cytosol | 94.02 | 95.29 |
| VIT_02s0025g04610.t01 | Wine grape | cytosol | 85.71 | 85.43 |
| Bra019776.1-P | Field mustard | cytosol | 90.37 | 84.74 |
| PGSC0003DMT400058533 | Potato | cytosol | 84.39 | 84.39 |
| CDY57072 | Canola | cytosol, extracellular, peroxisome | 90.03 | 83.9 |
| TraesCS6D01G238800.1 | Wheat | peroxisome | 83.06 | 83.33 |
| TraesCS6A01G257500.1 | Wheat | peroxisome | 82.72 | 83.0 |
| TraesCS6B01G267600.1 | Wheat | peroxisome | 82.39 | 82.67 |
| Solyc08g080140.2.1 | Tomato | extracellular | 82.06 | 82.06 |
| CDX98052 | Canola | cytosol | 87.04 | 81.11 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 74.09 | 80.22 |
| EES07456 | Sorghum | cytosol, peroxisome, plastid | 81.4 | 79.8 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 81.06 | 79.74 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 80.4 | 79.08 |
| Os02t0678400-01 | Rice | plasma membrane | 81.06 | 78.46 |
| Zm00001d017601_P001 | Maize | extracellular, peroxisome | 79.07 | 77.52 |
| HORVU6Hr1G065690.1 | Barley | peroxisome, plastid | 82.06 | 77.43 |
| AT1G78570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 79.73 | 35.87 |
| AT3G14790.2 | Thale cress | mitochondrion | 77.74 | 35.08 |
| AT1G53500.1 | Thale cress | cytosol, extracellular, peroxisome | 77.41 | 34.93 |
| AT3G28530.1 | Thale cress | cytosol, nucleus | 1.0 | 12.0 |
| AT1G63180.1 | Thale cress | cytosol | 5.32 | 4.56 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 4.98 | 4.27 |
| AT2G34850.2 | Thale cress | cytosol | 3.32 | 4.24 |
| AT1G64440.1 | Thale cress | cytosol, golgi | 4.32 | 3.74 |
| AT2G45310.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 4.98 | 3.43 |
| AT4G23920.1 | Thale cress | cytosol | 3.99 | 3.43 |
| AT4G10960.1 | Thale cress | golgi | 3.99 | 3.42 |
| AT4G20460.1 | Thale cress | golgi, mitochondrion | 4.65 | 3.41 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 4.98 | 3.26 |
| AT4G12250.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 4.65 | 3.21 |
| AT4G00110.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 4.32 | 3.02 |
| AT1G02000.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 4.32 | 3.0 |
| AT4G30440.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 3.99 | 2.8 |
| AT1G30620.4 | Thale cress | golgi, mitochondrion | 3.32 | 2.39 |
| AT5G44480.1 | Thale cress | mitochondrion | 3.32 | 2.29 |
Protein Annotations
| MapMan:3.13.6.1 | Gene3D:3.40.50.720 | PDB:4QQR | EntrezGene:842603 | ProteinID:AAF75813.1 | ProteinID:AEE34035.1 |
| EMBL:AF332445 | EMBL:AF387005 | ArrayExpress:AT1G63000 | EnsemblPlantsGene:AT1G63000 | RefSeq:AT1G63000 | TAIR:AT1G63000 |
| RefSeq:AT1G63000-TAIR-G | EnsemblPlants:AT1G63000.1 | TAIR:AT1G63000.1 | EMBL:AY088123 | EMBL:AY513232 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008830 |
| GO:GO:0008831 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010253 | GO:GO:0010489 |
| GO:GO:0010490 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016491 | GO:GO:0016853 | GO:GO:0019305 |
| GO:GO:0048046 | GO:GO:0055114 | GO:GO:0071555 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_564806.1 | Symbol:NRS/ER |
| PFAM:PF04321 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF405 | UniProt:Q9LQ04 | InterPro:RmlD-like-bd | SUPFAM:SSF51735 |
| UniParc:UPI00000A7648 | : | : | : | : | : |
Description
NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
Coordinates
chr1:+:23342211..23344120
Molecular Weight (calculated)
33599.2 Da
IEP (calculated)
5.785
GRAVY (calculated)
-0.234
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.