Factsheet for TraesCS6D01G238800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 3
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	mitochondrion, peroxisome, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G257500.1	Wheat	peroxisome	99.33	99.33
TraesCS6B01G267600.1	Wheat	peroxisome	99.33	99.33
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	98.0	92.16
Os02t0678400-01	Rice	plasma membrane	92.33	89.07
EES07456	Sorghum	cytosol, peroxisome, plastid	91.0	88.93
Zm00001d017601_P001	Maize	extracellular, peroxisome	90.0	87.95
VIT_02s0025g04610.t01	Wine grape	cytosol	86.67	86.09
GSMUA_Achr1P03840_001	Banana	cytosol	87.67	85.95
GSMUA_Achr5P10430_001	Banana	cytosol	87.0	85.29
CDY45969	Canola	cytosol	83.0	83.84
Bra027005.1-P	Field mustard	cytosol	83.0	83.84
CDY45471	Canola	cytosol	82.67	83.5
PGSC0003DMT400058533	Potato	cytosol	83.67	83.39
AT1G63000.1	Thale cress	cytosol	83.33	83.06
Solyc08g080140.2.1	Tomato	extracellular	81.67	81.4
KRH77471	Soybean	cytosol, endoplasmic reticulum	73.67	79.5
Bra019776.1-P	Field mustard	cytosol	83.67	78.19
CDY57072	Canola	cytosol, extracellular, peroxisome	84.0	78.02
CDX98052	Canola	cytosol	81.0	75.23
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	78.0	35.08
TraesCS4D01G206000.1	Wheat	mitochondrion	78.67	34.6
TraesCS1D01G315500.1	Wheat	cytosol, mitochondrion, plastid	4.33	3.53
TraesCS1D01G451900.1	Wheat	endoplasmic reticulum, golgi	4.0	3.39
TraesCS7D01G257800.1	Wheat	plastid	5.0	3.06
TraesCS7D01G154100.1	Wheat	golgi	4.33	3.0
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	4.0	2.91
TraesCS5D01G288700.1	Wheat	cytosol, endoplasmic reticulum, golgi, plastid	4.67	2.91
TraesCS6D01G335600.1	Wheat	plastid	4.0	2.74
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	3.67	2.72
TraesCS5D01G188200.1	Wheat	plastid	3.33	2.67
TraesCS5D01G298700.1	Wheat	mitochondrion	3.67	2.61
TraesCS5D01G321100.1	Wheat	cytosol	3.0	2.44
TraesCS4D01G224000.1	Wheat	plastid	3.67	2.28

Protein Annotations

EnsemblPlants:TraesCS6D01G238800.1	EnsemblPlantsGene:TraesCS6D01G238800	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:RmlD-like-bd	PANTHER:PTHR10366
PANTHER:PTHR10366:SF405	PFAM:PF04321	SUPFAM:SSF51735	TIGR:cd05254	MapMan:3.13.6.1	:

Description

No Description!

Coordinates

chr6D:+:339083031..339086298

Molecular Weight (calculated)

33344.0 Da

IEP (calculated)

6.905

GRAVY (calculated)

-0.201

Length

300 amino acids

Sequence
(BLAST)

001: MAASTNGSSP PALKFLIYGR TGWIGGLLGK LCTAQGIPFA YGAGRLENRA QLEADIDEVA PTHVFNAAGV TGRPNVDWCE THRVETIRAN VCGTLTLADV
101: CRARGLVLIN YATGCIFEYD AGHPLGSGVG FKEEDTPNFV GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLSNPRNF ITKITRYDKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIWN FTNPGVVSHN EILEMYRDYI DPNFSWKNFN LEEQAKVIVA PRSNNELDTV KLKTEFPELL SIKESLIKNV FKPNQKTSKA

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.