Factsheet for VIT_02s0025g04610.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
golgi 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058533	Potato	cytosol	87.75	88.04
Solyc08g080140.2.1	Tomato	extracellular	86.42	86.71
TraesCS6D01G238800.1	Wheat	peroxisome	86.09	86.67
CDY45969	Canola	cytosol	85.1	86.53
TraesCS6B01G267600.1	Wheat	peroxisome	85.76	86.33
TraesCS6A01G257500.1	Wheat	peroxisome	85.76	86.33
Bra027005.1-P	Field mustard	cytosol	84.77	86.2
CDY45471	Canola	cytosol	84.44	85.86
AT1G63000.1	Thale cress	cytosol	85.43	85.71
KRH77471	Soybean	cytosol, endoplasmic reticulum	76.82	83.45
EES07456	Sorghum	cytosol, peroxisome, plastid	83.11	81.76
GSMUA_Achr1P03840_001	Banana	cytosol	82.78	81.7
HORVU6Hr1G065690.1	Barley	peroxisome, plastid	85.76	81.19
Zm00001d017601_P001	Maize	extracellular, peroxisome	82.45	81.11
GSMUA_Achr5P10430_001	Banana	cytosol	81.79	80.72
Os02t0678400-01	Rice	plasma membrane	83.11	80.71
Bra019776.1-P	Field mustard	cytosol	84.77	79.75
CDY57072	Canola	cytosol, extracellular, peroxisome	84.44	78.95
CDX98052	Canola	cytosol	82.78	77.4
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	80.79	37.14
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	81.79	36.59
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	4.3	5.51
VIT_02s0025g01580.t01	Wine grape	golgi	4.97	4.31
VIT_02s0025g01560.t01	Wine grape	golgi	4.64	4.02
VIT_02s0025g04210.t01	Wine grape	cytosol	4.64	4.0
VIT_03s0017g00980.t01	Wine grape	golgi	5.3	3.84
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	5.3	3.55
VIT_15s0048g00330.t01	Wine grape	plastid	4.64	3.28
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	4.64	3.23
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	4.64	3.22
VIT_16s0022g01450.t01	Wine grape	mitochondrion	4.3	3.19
VIT_10s0003g05640.t01	Wine grape	golgi	4.3	3.11
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	4.64	3.01
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	1.32	1.03

Protein Annotations

EntrezGene:100254814	wikigene:100254814	MapMan:3.13.6.1	Gene3D:3.40.50.720	ProteinID:CCB58410	ProteinID:CCB58410.1
UniProt:F6HUI7	EMBL:FN596251	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008830	GO:GO:0008831	GO:GO:0009058	GO:GO:0009506
GO:GO:0009987	GO:GO:0010253	GO:GO:0016020	GO:GO:0019305	GO:GO:0048046	EntrezGene:LOC100254814
wikigene:LOC100254814	InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	InterPro:RmlD-like-bd
SUPFAM:SSF51735	TIGR:TC61357	UniParc:UPI00015CD219	ArrayExpress:VIT_02s0025g04610	EnsemblPlantsGene:VIT_02s0025g04610	EnsemblPlants:VIT_02s0025g04610.t01
unigene:Vvi.23811	unigene:Vvi.9313	RefSeq:XP_002282339	RefSeq:XP_002282339.1	:	:

Description

No Description!

Coordinates

chr2:-:4150397..4152204

Molecular Weight (calculated)

33676.4 Da

IEP (calculated)

7.859

GRAVY (calculated)

-0.260

Length

302 amino acids

Sequence
(BLAST)

001: MGFPANGAAA SDRKLKFLIY GRTGWIGGLL GKLCEAQGLE YSYGSGRLEN RASLEADLAS VKPTHVFNAA GVTGRPNVDW CESHKVETIR TNVAGTLTLA
101: DVCREKGLVL INYATGCIFE YDANHPLGSG VGFKEEDTPN FIGSFYSKTK AMVEDLLKNY ENVCTLRVRM PISSDLSNPR NFITKITRYE KVVNIPNSMT
201: ILDELLPISI EMAKRNLTGI WNFTNPGVVS HNEILEMYRD YIDPNFAWKN FTLEEQAKVI VAPRSNNELD ASKLKKEFPE LMSIKESLIK YVFKPNQKAT
301: GA

Best Arabidopsis Sequence Match ( AT1G63000.1 )
(BLAST)

001: MVADANGSSS SSFNFLIYGK TGWIGGLLGK LCEAQGITYT YGSGRLQDRQ SIVADIESVK PSHVFNAAGV TGRPNVDWCE SHKVETIRTN VAGTLTLADI
101: CREKGLVLIN YATGCIFEYD SGHPLGSGIG FKEEDTPNFT GSFYSKTKAM VEELLKNYEN VCTLRVRMPI SSDLTNPRNF ITKIARYEKV VDIPNSMTIL
201: DELLPISIEM AKRNLTGIYN FTNPGVVSHN EILEMYRDYI DPSFTWKNFT LEEQAKVIVA PRSNNELDAT KLKTEFPELM SIKESLIKFV FEPNKKTEVK
301: A

Arabidopsis Description

NRS/ERBifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.