Factsheet for VIT_00s1525g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
endoplasmic reticulum 2
golgi 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	89.2	100.0
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	51.03	94.07
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	78.16	78.52
VIT_15s0048g00330.t01	Wine grape	plastid	76.78	78.22
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	74.94	74.77
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	73.79	74.65
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	73.33	74.36
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	73.33	74.36
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	73.33	74.36
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	74.02	74.02
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	72.87	73.89
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	73.79	73.79
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	73.33	73.5
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	73.79	71.97
Solyc08g079440.1.1	Tomato	nucleus	73.33	71.69
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	76.55	71.61
VIT_16s0022g01450.t01	Wine grape	mitochondrion	67.13	71.57
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	69.43	70.23
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	71.26	67.54
TraesCS4D01G224000.1	Wheat	plastid	67.13	60.58
Zm00001d028427_P001	Maize	plastid	66.67	60.54
TraesCS4A01G080300.1	Wheat	plastid	66.21	60.25
EER95171	Sorghum	plastid	66.44	60.21
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	62.3	60.09
Os03t0249500-01	Rice	plastid	66.67	59.92
Zm00001d047915_P001	Maize	plastid	65.52	59.5
TraesCS4B01G223700.1	Wheat	plastid	67.13	59.47
HORVU4Hr1G063010.1	Barley	peroxisome	66.9	56.61
VIT_02s0025g04210.t01	Wine grape	cytosol	21.15	26.29
VIT_02s0025g01580.t01	Wine grape	golgi	20.0	25.0
VIT_02s0025g01560.t01	Wine grape	golgi	19.77	24.71
VIT_10s0003g05640.t01	Wine grape	golgi	20.23	21.05
VIT_03s0017g00980.t01	Wine grape	golgi	19.54	20.38
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	21.61	13.93
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	20.69	13.7
VIT_02s0025g04610.t01	Wine grape	cytosol	3.22	4.64

Protein Annotations

EntrezGene:100244845	wikigene:100244845	EntrezGene:100854767	wikigene:100854767	MapMan:3.13.4.1	Gene3D:3.40.50.720
Gene3D:3.90.25.10	EMBL:AM447198	ProteinID:CAN60968	ProteinID:CAN60968.1	ProteinID:CCB45359	ProteinID:CCB45359.1
ProteinID:CCB62981	ProteinID:CCB62981.1	UniProt:F6GZH3	EMBL:FN595108	EMBL:FN596941	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016857	GO:GO:0050662	EntrezGene:LOC100244845	wikigene:LOC100244845
EntrezGene:LOC100854767	wikigene:LOC100854767	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF16363
PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF1	SUPFAM:SSF51735	TIGR:TC63675	TMHMM:TMhelix
UniParc:UPI0001982CB5	ArrayExpress:VIT_00s1525g00010	EnsemblPlantsGene:VIT_00s1525g00010	EnsemblPlants:VIT_00s1525g00010.t01	unigene:Vvi.24615	unigene:Vvi.9431
RefSeq:XP_003635586	RefSeq:XP_003635586.1	RefSeq:XP_003635586.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:39462154..39463733

Molecular Weight (calculated)

48689.4 Da

IEP (calculated)

10.367

GRAVY (calculated)

-0.315

Length

435 amino acids

Sequence
(BLAST)

001: MSQHMDNIPS TPGKFKSDKY HYIHRFRSHS SLAKLILWSL FFFSVICFFF LLSPTSPTSP PADRSRRVLA NYTWGGPEWE KKVRQSARVR SDHGHTVLVT
101: GGAGFVGSHV SAALKRRGDG VIGLDNFNNY YDPELKRHRR DLLERAGVFV VEGDINDSEL LRKLFDVVAF THVMHLAAQA GVRYAMQNPK SYVNSNIAGL
201: VNLLEVCKSA DPQPAIVWAS SSSVYGLNSK VPFSEKDRTD RPASLYAATK KAGEAIAHTY NHIYGLSITG LRFFTVYGPW GRPDMAYFFF TRDILTGKPI
301: TIFEGPDHGS VARDFTYIDD IVKGCLASLD TAKKSTGTGG KKKGAAQFRI FNLGNTSPVD VSKLVSILEK LLKVKAKRRV LPMPRNGDVQ YTHANISLAQ
401: RELGYKPTTD LESGLKKFVR WYITYQSKSK KKSSW

Best Arabidopsis Sequence Match ( AT4G00110.1 )
(BLAST)

001: MKQMSHLDDI PSTPGKFKPY FHRTRWQSSV AKLAFWSLVF VGLIFIFFYR SPVSSNPADP SRRSLRTYSW GGPAWEKRVR SSARLRTRRG FSVLVTGAAG
101: FVGTHVSAAL KRRGDGVLGL DNFNDYYDPS LKRARQALLE RSGVFVVEGD INDAALLKKL FEVVPFTHVM HLAAQAGVRY AMENPSSYVH SNIAGFVNLL
201: EVCKSANPQP AIVWASSSSV YGLNTKVPFS EKDRTDQPAS LYAATKKAGE EIAHTYNHIY GLSLTGLRFF TVYGPWGRPD MAYFFFTRDI LKGKAISIFE
301: GVNHGTVARD FTYIDDIVKG CLGALDTAEK STGSGGKKRG AAQLRVFNLG NTSPVPVTDL VTILERLLKV KAKRNIMKLP RNGDVQFTHA NISSAQRELG
401: YKPTTDLQTG LKKFARWYLG YYNGGKKAAS

Arabidopsis Description

GAE3GAE3 [Source:UniProtKB/TrEMBL;Acc:A0A178V2K1]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.