Factsheet for VIT_16s0022g01450.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
extracellular 2
golgi 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	42.89	74.15
PGSC0003DMT400059215	Potato	plastid	37.99	69.51
VIT_15s0048g00330.t01	Wine grape	plastid	72.06	68.85
VIT_15s0048g00340.t01	Wine grape	endoplasmic reticulum, plastid	72.55	68.36
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	63.97	67.27
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	71.57	67.13
KRH40009	Soybean	plastid	64.46	64.62
VIT_15s0048g00320.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, mitochondrion	71.57	62.8
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	64.46	61.16
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	65.69	58.39
VIT_05s0029g00420.t01	Wine grape	endoplasmic reticulum	63.48	57.43
Os03t0249500-01	Rice	plastid	63.97	53.93
Zm00001d028427_P001	Maize	plastid	63.24	53.86
TraesCS4A01G080300.1	Wheat	plastid	62.99	53.77
EER95171	Sorghum	plastid	62.99	53.54
Zm00001d047915_P001	Maize	plastid	62.75	53.44
TraesCS4D01G224000.1	Wheat	plastid	62.99	53.32
TraesCS4B01G223700.1	Wheat	plastid	62.99	52.34
HORVU4Hr1G063010.1	Barley	peroxisome	62.99	50.0
VIT_02s0025g04210.t01	Wine grape	cytosol	23.53	27.43
VIT_02s0025g01580.t01	Wine grape	golgi	22.79	26.72
VIT_02s0025g01560.t01	Wine grape	golgi	22.55	26.44
VIT_10s0003g05640.t01	Wine grape	golgi	21.32	20.81
VIT_03s0017g00980.t01	Wine grape	golgi	20.34	19.9
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	22.79	13.78
VIT_04s0069g00830.t01	Wine grape	cytosol, mitochondrion, plastid	21.57	13.39
VIT_02s0025g04610.t01	Wine grape	cytosol	3.19	4.3

Protein Annotations

EntrezGene:100242871	wikigene:100242871	MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	ProteinID:CCB49282
ProteinID:CCB49282.1	InterPro:Epimerase_deHydtase	UniProt:F6HAM5	EMBL:FN595506	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0016857	GO:GO:0050662	EntrezGene:LOC100242871	wikigene:LOC100242871	InterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI0001984F00	ArrayExpress:VIT_16s0022g01450	EnsemblPlantsGene:VIT_16s0022g01450	EnsemblPlants:VIT_16s0022g01450.t01	RefSeq:XP_002266529
RefSeq:XP_002266529.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:13468227..13469484

Molecular Weight (calculated)

45418.4 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.135

Length

408 amino acids

Sequence
(BLAST)

001: MTRFSSANRF RFQFSISKYA FWWCLFFIVL LCFVSNHLLL SDNDRRLLRN RGKGWEQRVL SSASPRSSTG STVLVTGAAG FIGSHVSAAL RNRGDGVVGL
101: DNFNNYYDVS LKHDRRAMLE SSGVFIVDGD INDQVLLKKL FSIVQFTHVM HLAAQAGVRY AMKNPASYID SNLSGFVNLL EVCKEAKPQP AIIWASSSSV
201: YGLNSKVPFS ETDRTDQPAS LYAATKKAGE EIAHSYNHIY GLSITGLRFF TVYGPWGRPD MAYFFFTKDI LQGNSIRIFE GGKGGVVARD FTYIDDIVKG
301: CLAALDTAEK STGSGGKKMR PAQLRVYNLG NTSPVEVGSL VSILERLLKV KARRVATPMP RNGDVMYTHA NISLAEKELG YKPTTDLRSG LEKFVKWYLT
401: YYNQSTVN

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.