Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- endoplasmic reticulum 3
- golgi 3
- extracellular 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0072g01030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | VIT_18s0072g01030.t01 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g092330.1.1 | Tomato | nucleus | 84.04 | 83.85 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 83.15 | 83.71 |
| KRH31569 | Soybean | mitochondrion | 82.04 | 80.09 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 73.61 | 79.81 |
| CDX77481 | Canola | endoplasmic reticulum | 79.82 | 79.47 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 79.82 | 79.3 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 80.71 | 79.13 |
| CDX85133 | Canola | endoplasmic reticulum | 79.82 | 78.95 |
| CDX92990 | Canola | endoplasmic reticulum | 79.16 | 78.29 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 79.82 | 78.26 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 79.82 | 78.26 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 78.71 | 78.19 |
| CDY64583 | Canola | endoplasmic reticulum | 79.6 | 78.04 |
| CDY53207 | Canola | endoplasmic reticulum | 78.71 | 78.02 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 78.71 | 77.85 |
| KRG97348 | Soybean | endoplasmic reticulum | 75.39 | 77.45 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 72.73 | 75.58 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 71.18 | 74.13 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 69.4 | 70.65 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 69.18 | 70.43 |
| VIT_02s0241g00180.t01 | Wine grape | cytosol, plastid | 36.59 | 69.92 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 68.07 | 69.14 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 73.84 | 67.55 |
| VIT_15s0048g00330.t01 | Wine grape | plastid | 63.41 | 66.98 |
| VIT_15s0048g00340.t01 | Wine grape | endoplasmic reticulum, plastid | 63.64 | 66.28 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 69.62 | 64.74 |
| VIT_16s0022g01450.t01 | Wine grape | mitochondrion | 57.43 | 63.48 |
| VIT_00s2240g00010.t01 | Wine grape | cytosol, endoplasmic reticulum, golgi, plastid | 54.32 | 63.14 |
| VIT_00s1525g00010.t01 | Wine grape | cytosol, endoplasmic reticulum, golgi, plastid | 60.09 | 62.3 |
| VIT_15s0048g00320.t01 | Wine grape | cytosol, endoplasmic reticulum, golgi, mitochondrion | 64.08 | 62.15 |
| Zm00001d049804_P001 | Maize | plasma membrane | 60.31 | 60.71 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 64.75 | 59.96 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 63.41 | 59.83 |
| Os08t0526100-01 | Rice | plastid | 63.41 | 59.83 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 64.97 | 59.31 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 58.98 | 59.11 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 62.75 | 59.08 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 62.97 | 58.92 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 62.75 | 58.84 |
| TraesCS7B01G153900.1 | Wheat | plastid | 63.86 | 58.54 |
| TraesCS7D01G257800.1 | Wheat | plastid | 63.41 | 58.37 |
| TraesCS7A01G256600.1 | Wheat | plastid | 63.41 | 58.37 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 64.3 | 58.23 |
| HORVU7Hr1G053260.2 | Barley | plastid | 62.97 | 57.96 |
| HORVU5Hr1G075660.1 | Barley | plastid | 63.64 | 56.5 |
| VIT_02s0025g04210.t01 | Wine grape | cytosol | 20.84 | 26.86 |
| VIT_02s0025g01580.t01 | Wine grape | golgi | 18.85 | 24.43 |
| VIT_02s0025g01560.t01 | Wine grape | golgi | 18.85 | 24.43 |
| VIT_10s0003g05640.t01 | Wine grape | golgi | 20.84 | 22.49 |
| VIT_03s0017g00980.t01 | Wine grape | golgi | 19.96 | 21.58 |
| VIT_19s0014g00290.t01 | Wine grape | cytosol, mitochondrion, plastid | 21.29 | 14.22 |
| VIT_04s0069g00830.t01 | Wine grape | cytosol, mitochondrion, plastid | 19.73 | 13.55 |
| VIT_02s0025g04610.t01 | Wine grape | cytosol | 3.55 | 5.3 |
Protein Annotations
| EntrezGene:100241904 | wikigene:100241904 | MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EMBL:AM465310 |
| ProteinID:CAN83418 | ProteinID:CAN83418.1 | ProteinID:CCB44308 | ProteinID:CCB44308.1 | InterPro:Epimerase_deHydtase | UniProt:F6GWE5 |
| EMBL:FN594958 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | GO:GO:0050662 |
| EntrezGene:LOC100241904 | wikigene:LOC100241904 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF19 | SUPFAM:SSF51735 | TIGR:TC63320 | TMHMM:TMhelix | UniParc:UPI00015CBE72 |
| ArrayExpress:VIT_05s0029g00420 | EnsemblPlantsGene:VIT_05s0029g00420 | EnsemblPlants:VIT_05s0029g00420.t01 | unigene:Vvi.265 | RefSeq:XP_002265088 | RefSeq:XP_002265088.1 |
Description
No Description!
Coordinates
chr5:+:15098437..15100104
Molecular Weight (calculated)
50198.1 Da
IEP (calculated)
9.946
GRAVY (calculated)
-0.280
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPDTSKT TKLERYNSYI RRVNSTKLMA ASSKLLFRAT LLVALVLIFF FTLNYPPLSD NPHHVLTHQN FLSSAFYGSG ASWEKQVRHS STPRRPNGFS
101: VLVTGAGGFV GTHCSLALKK RGDGVLGLDN FNDYYDPSLK RARQAMLSKH QIFIVEGDLN DAPLLSKLFD MVPFTHILHL AAQAGVRYAM QNPQSYVRSN
201: IAGFVNLLEI AKAADPQPAI VWASSSSVYG LNTENPFSEL HRTDQPASLY AATKKAGEEI AHTYNHIYGL SLTGLRFFTV YGPWGRPDMA YFFFTKDILQ
301: GKPITIYQTQ DDKEVARDFT YIDDVVKGCL GALDTAEKST GSGGKKRGPA QLRIYNLGNT SPVPVGRLVG ILEGLLNVKA KKHVIKMPRN GDVPYTHANV
401: SLAYRDFGYK PSTDLATGLR RFVKWYVSYY GIQTRVKKET LKRSDQLEES D
101: VLVTGAGGFV GTHCSLALKK RGDGVLGLDN FNDYYDPSLK RARQAMLSKH QIFIVEGDLN DAPLLSKLFD MVPFTHILHL AAQAGVRYAM QNPQSYVRSN
201: IAGFVNLLEI AKAADPQPAI VWASSSSVYG LNTENPFSEL HRTDQPASLY AATKKAGEEI AHTYNHIYGL SLTGLRFFTV YGPWGRPDMA YFFFTKDILQ
301: GKPITIYQTQ DDKEVARDFT YIDDVVKGCL GALDTAEKST GSGGKKRGPA QLRIYNLGNT SPVPVGRLVG ILEGLLNVKA KKHVIKMPRN GDVPYTHANV
401: SLAYRDFGYK PSTDLATGLR RFVKWYVSYY GIQTRVKKET LKRSDQLEES D
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.