Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 95.0 | 95.0 |
| CDX92990 | Canola | endoplasmic reticulum | 94.13 | 94.96 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 94.78 | 94.78 |
| CDY64583 | Canola | endoplasmic reticulum | 94.78 | 94.78 |
| CDY53207 | Canola | endoplasmic reticulum | 93.7 | 94.73 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 93.48 | 94.71 |
| CDX77481 | Canola | endoplasmic reticulum | 93.26 | 94.7 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 93.7 | 94.52 |
| CDX85133 | Canola | endoplasmic reticulum | 93.48 | 94.3 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 79.13 | 80.71 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 75.65 | 77.68 |
| KRH31569 | Soybean | mitochondrion | 77.39 | 77.06 |
| Solyc09g092330.1.1 | Tomato | nucleus | 75.43 | 76.77 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 69.35 | 76.68 |
| KRG97348 | Soybean | endoplasmic reticulum | 72.83 | 76.31 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 73.48 | 74.45 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 68.91 | 73.04 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 66.74 | 70.9 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 66.09 | 68.62 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 65.0 | 67.49 |
| AT4G00110.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 63.04 | 67.44 |
| AT1G02000.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 62.61 | 66.36 |
| AT2G45310.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 62.61 | 65.9 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 63.48 | 65.77 |
| AT4G12250.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 61.96 | 65.37 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 69.78 | 65.11 |
| AT4G30440.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 59.35 | 63.64 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 65.43 | 62.06 |
| Zm00001d049804_P001 | Maize | plasma membrane | 59.13 | 60.71 |
| Os08t0526100-01 | Rice | plastid | 61.74 | 59.41 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 62.61 | 59.14 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 61.3 | 59.0 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 63.26 | 58.91 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 61.09 | 58.66 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 61.09 | 58.42 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 63.04 | 58.23 |
| TraesCS7B01G153900.1 | Wheat | plastid | 62.17 | 58.13 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 60.87 | 58.09 |
| TraesCS7A01G256600.1 | Wheat | plastid | 61.74 | 57.96 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 56.52 | 57.78 |
| TraesCS7D01G257800.1 | Wheat | plastid | 61.52 | 57.76 |
| HORVU7Hr1G053260.2 | Barley | plastid | 61.09 | 57.35 |
| HORVU5Hr1G075660.1 | Barley | plastid | 61.52 | 55.71 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 20.65 | 27.07 |
| AT4G23920.1 | Thale cress | cytosol | 20.43 | 26.86 |
| AT1G63180.1 | Thale cress | cytosol | 20.43 | 26.78 |
| AT4G10960.1 | Thale cress | golgi | 20.22 | 26.5 |
| AT1G64440.1 | Thale cress | cytosol, golgi | 19.35 | 25.57 |
| AT1G30620.4 | Thale cress | golgi, mitochondrion | 21.52 | 23.63 |
| AT4G20460.1 | Thale cress | golgi, mitochondrion | 19.57 | 21.9 |
| AT5G44480.1 | Thale cress | mitochondrion | 19.57 | 20.64 |
| AT3G28530.1 | Thale cress | cytosol, nucleus | 1.09 | 20.0 |
| AT2G34850.2 | Thale cress | cytosol | 9.78 | 19.07 |
| AT3G14790.2 | Thale cress | mitochondrion | 20.43 | 14.09 |
| AT1G78570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 20.0 | 13.75 |
| AT1G53500.1 | Thale cress | cytosol, extracellular, peroxisome | 19.78 | 13.64 |
| AT1G63000.1 | Thale cress | cytosol | 3.26 | 4.98 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EntrezGene:821965 | UniProt:A0A178VKU1 | ProteinID:AEE76818.1 |
| EMBL:AF083691 | EMBL:AF370210 | ArrayExpress:AT3G23820 | EnsemblPlantsGene:AT3G23820 | RefSeq:AT3G23820 | TAIR:AT3G23820 |
| RefSeq:AT3G23820-TAIR-G | EnsemblPlants:AT3G23820.1 | TAIR:AT3G23820.1 | EMBL:AY056117 | EMBL:AY062625 | EMBL:AY133771 |
| ProteinID:BAB03000.1 | ProteinID:CAI53858.1 | Symbol:GAE6 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0005975 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016853 | GO:GO:0016857 | GO:GO:0032580 | GO:GO:0033481 | GO:GO:0050378 | GO:GO:0050829 |
| GO:GO:0050832 | UniProt:I1VCA6 | EMBL:JQ937233 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_189024.1 |
| InterPro:Nuc_sugar_epim | ProteinID:OAP06987.1 | PFAM:PF16363 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF19 | UniProt:Q9LIS3 |
| SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0000048767 | SEG:seg | : | : |
Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
Coordinates
chr3:+:8603212..8605810
Molecular Weight (calculated)
50572.4 Da
IEP (calculated)
10.092
GRAVY (calculated)
-0.228
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.