Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035048.1-P | Field mustard | cytosol, mitochondrion, plastid | 94.62 | 94.48 |
| CDX88455 | Canola | cytosol, peroxisome, plastid | 94.47 | 89.39 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 84.3 | 86.9 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 82.36 | 86.64 |
| AT3G14790.2 | Thale cress | mitochondrion | 85.8 | 86.06 |
| AT1G53500.1 | Thale cress | cytosol, extracellular, peroxisome | 85.65 | 85.91 |
| Zm00001d047796_P003 | Maize | extracellular, nucleus, plasma membrane | 84.6 | 84.23 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 78.18 | 84.22 |
| TraesCS4A01G099200.1 | Wheat | cytosol | 84.75 | 84.0 |
| EER95086 | Sorghum | cytosol, mitochondrion, plastid | 84.16 | 83.78 |
| EER95078 | Sorghum | cytosol, mitochondrion, peroxisome | 84.16 | 83.78 |
| Os03t0278200-01 | Rice | nucleus, plasma membrane | 84.3 | 83.56 |
| Zm00001d028654_P002 | Maize | cytosol | 83.86 | 83.48 |
| TraesCS4D01G206000.1 | Wheat | mitochondrion | 84.75 | 83.14 |
| TraesCS4B01G205100.3 | Wheat | mitochondrion | 84.6 | 82.99 |
| VIT_04s0069g00830.t01 | Wine grape | cytosol, mitochondrion, plastid | 78.33 | 79.76 |
| AT1G63000.1 | Thale cress | cytosol | 35.87 | 79.73 |
| PGSC0003DMT400075973 | Potato | cytosol, mitochondrion, peroxisome | 77.58 | 79.36 |
| Solyc08g069110.2.1 | Tomato | unclear | 76.83 | 78.96 |
| HORVU4Hr1G059120.2 | Barley | plastid | 84.75 | 78.42 |
| KRH16155 | Soybean | cytosol | 75.34 | 76.95 |
| KRH04933 | Soybean | cytosol, mitochondrion, plastid | 73.99 | 76.86 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 69.51 | 76.86 |
| AT1G64440.1 | Thale cress | cytosol, golgi | 13.6 | 26.15 |
| AT1G63180.1 | Thale cress | cytosol | 13.15 | 25.07 |
| AT4G23920.1 | Thale cress | cytosol | 13.0 | 24.86 |
| AT4G10960.1 | Thale cress | golgi | 12.86 | 24.5 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 12.71 | 24.22 |
| AT4G20460.1 | Thale cress | golgi, mitochondrion | 13.9 | 22.63 |
| AT2G34850.2 | Thale cress | cytosol | 7.92 | 22.46 |
| AT1G30620.4 | Thale cress | golgi, mitochondrion | 13.75 | 21.96 |
| AT4G00110.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 13.9 | 21.63 |
| AT4G12250.1 | Thale cress | cytosol, endoplasmic reticulum, golgi | 14.05 | 21.56 |
| AT2G45310.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 13.9 | 21.28 |
| AT1G02000.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 13.75 | 21.2 |
| AT4G30440.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 13.0 | 20.28 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 13.75 | 20.0 |
| AT5G44480.1 | Thale cress | mitochondrion | 12.86 | 19.72 |
| AT3G28530.1 | Thale cress | cytosol, nucleus | 0.45 | 12.0 |
Protein Annotations
| KEGG:00521+4.2.1.46 | KEGG:00523+4.2.1.46 | KEGG:00525+4.2.1.46 | MapMan:3.13.6.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 |
| EntrezGene:844193 | UniProt:A0A178W4U5 | ProteinID:AAD30579.1 | ProteinID:AEE36122.1 | ArrayExpress:AT1G78570 | EnsemblPlantsGene:AT1G78570 |
| RefSeq:AT1G78570 | TAIR:AT1G78570 | RefSeq:AT1G78570-TAIR-G | EnsemblPlants:AT1G78570.1 | TAIR:AT1G78570.1 | EMBL:AY042833 |
| EMBL:AY081471 | Unigene:At.198 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008460 | GO:GO:0009058 | GO:GO:0009225 |
| GO:GO:0009506 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010253 | GO:GO:0010280 | GO:GO:0010315 |
| GO:GO:0016043 | GO:GO:0016491 | GO:GO:0016829 | GO:GO:0016853 | GO:GO:0030154 | GO:GO:0042127 |
| GO:GO:0050377 | GO:GO:0051555 | GO:GO:0055114 | GO:GO:0071555 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf |
| RefSeq:NP_177978.1 | ProteinID:OAP13520.1 | PFAM:PF04321 | PFAM:PF16363 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009049 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR43000 |
| PANTHER:PTHR43000:SF8 | UniProt:Q9SYM5 | Symbol:RHM1 | InterPro:RmlD-like-bd | SUPFAM:SSF51735 | TIGRFAMs:TIGR01181 |
| UniParc:UPI00000A5E19 | InterPro:dTDP_Gluc_deHydtase | : | : | : | : |
Description
RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
Coordinates
chr1:+:29549540..29552438
Molecular Weight (calculated)
75376.0 Da
IEP (calculated)
7.300
GRAVY (calculated)
-0.417
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.