Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23820.1 | KRG91803 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | KRH34983 | AT4G09570.1 | 19130088 |
| AT3G23820.1 | KRH34984 | AT4G09570.1 | 19130088 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH31569 | Soybean | mitochondrion | 87.93 | 83.55 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 77.45 | 75.39 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 76.31 | 74.78 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 70.84 | 74.76 |
| Solyc09g092330.1.1 | Tomato | nucleus | 76.31 | 74.11 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 75.85 | 73.35 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 75.85 | 73.03 |
| CDX77481 | Canola | endoplasmic reticulum | 75.17 | 72.85 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 76.31 | 72.83 |
| CDX92990 | Canola | endoplasmic reticulum | 75.63 | 72.81 |
| CDY53207 | Canola | endoplasmic reticulum | 75.4 | 72.75 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 75.17 | 72.69 |
| CDX85133 | Canola | endoplasmic reticulum | 75.17 | 72.37 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 75.63 | 72.17 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 75.63 | 72.17 |
| CDY64583 | Canola | endoplasmic reticulum | 75.4 | 71.96 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 68.34 | 69.12 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 67.43 | 68.36 |
| GSMUA_Achr8P00950_001 | Banana | cytosol, endoplasmic reticulum, golgi | 66.97 | 66.37 |
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 66.51 | 65.77 |
| KRH04016 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 63.1 | 64.42 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 64.92 | 64.33 |
| KRH57292 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 62.64 | 64.1 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 69.93 | 62.27 |
| KRH02967 | Soybean | nucleus | 60.82 | 61.95 |
| KRH72376 | Soybean | endoplasmic reticulum, mitochondrion | 60.82 | 61.95 |
| KRH76209 | Soybean | endoplasmic reticulum, plastid | 61.73 | 61.87 |
| KRH65316 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 61.73 | 61.87 |
| KRH40009 | Soybean | plastid | 55.35 | 59.71 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 65.15 | 58.97 |
| Zm00001d049804_P001 | Maize | plasma membrane | 58.09 | 56.92 |
| Os08t0526100-01 | Rice | plastid | 61.28 | 56.28 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 61.28 | 56.28 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 62.41 | 56.26 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 63.78 | 56.22 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 57.63 | 56.22 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 63.1 | 56.07 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 61.28 | 55.93 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 61.28 | 55.81 |
| TraesCS7A01G256600.1 | Wheat | plastid | 62.19 | 55.71 |
| TraesCS7B01G153900.1 | Wheat | plastid | 62.41 | 55.69 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 60.59 | 55.53 |
| TraesCS7D01G257800.1 | Wheat | plastid | 61.96 | 55.51 |
| HORVU7Hr1G053260.2 | Barley | plastid | 61.73 | 55.31 |
| HORVU5Hr1G075660.1 | Barley | plastid | 61.28 | 52.95 |
| KRH51264 | Soybean | plastid | 19.82 | 24.79 |
| KRH41129 | Soybean | nucleus | 19.36 | 24.29 |
| KRH59827 | Soybean | extracellular, golgi | 19.13 | 24.0 |
| KRH60045 | Soybean | extracellular | 18.45 | 23.14 |
| KRH41316 | Soybean | extracellular, golgi | 18.45 | 23.14 |
| KRH77652 | Soybean | plastid | 19.13 | 21.48 |
| KRH11871 | Soybean | golgi, plastid | 20.05 | 21.2 |
| KRH43065 | Soybean | golgi, mitochondrion, plastid | 20.05 | 21.15 |
| KRH36892 | Soybean | golgi, mitochondrion | 19.82 | 20.96 |
| KRH27832 | Soybean | plastid | 18.45 | 20.88 |
| KRH59194 | Soybean | golgi, mitochondrion | 19.13 | 20.19 |
| KRH00406 | Soybean | cytosol, mitochondrion, nucleus | 2.51 | 15.94 |
| KRG99450 | Soybean | cytosol, mitochondrion, nucleus | 2.51 | 15.94 |
| KRH26241 | Soybean | cytosol | 1.82 | 15.09 |
| KRH27429 | Soybean | cytosol, mitochondrion, plastid | 20.05 | 13.15 |
| KRH21867 | Soybean | cytosol, mitochondrion, plastid | 20.05 | 13.15 |
| KRH46062 | Soybean | cytosol | 18.22 | 13.07 |
| KRG98907 | Soybean | cytosol, mitochondrion, peroxisome | 19.59 | 13.03 |
| KRH13001 | Soybean | cytosol, mitochondrion, plastid | 19.82 | 13.02 |
| KRH43408 | Soybean | nucleus | 19.82 | 13.02 |
| KRH04933 | Soybean | cytosol, mitochondrion, plastid | 18.22 | 12.42 |
| KRH16155 | Soybean | cytosol | 18.22 | 12.21 |
| KRH57264 | Soybean | endoplasmic reticulum | 2.51 | 5.26 |
| KRH03995 | Soybean | plastid | 3.42 | 4.97 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 2.96 | 4.68 |
| KRH57441 | Soybean | cytosol | 2.96 | 4.18 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | UniProt:A0A0R0F5B0 | EMBL:ACUP02010794 | InterPro:Epimerase_deHydtase |
| EnsemblPlantsGene:GLYMA_18G002200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | GO:GO:0050662 |
| EnsemblPlants:KRG97348 | ProteinID:KRG97348 | ProteinID:KRG97348.1 | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 |
| PRINTS:PR01713 | PANTHER:PTHR43574 | PANTHER:PTHR43574:SF19 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI00023DA970 |
Description
hypothetical protein
Coordinates
chr18:-:181021..182369
Molecular Weight (calculated)
48351.7 Da
IEP (calculated)
10.126
GRAVY (calculated)
-0.239
Length
439 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSPPDTS KSIKLERYNS YIRRLNSTKL LNASSKLLFR ATLLVALILV FLFTFNYPPL SATDSTHRHL HAHSHYFLSS SSFGAWEKQV RHSASPRRPN
101: GLTVLVTGAA GFVGSHCSLA LKKRGDGVLG LDNFNNYYDP FLNAPGRQCS GNTKCSSWKK LFDLVPFTHI LHLAAQAGVR YAMQNPQSYV TANIAGFVNL
201: LEAAKSANPQ PAIVWASSSS VYGLNTQNPF SELHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTKD ILHGKTIDVY
301: QTPEGKQVAR DFTYIDDIVK GCLGALDSAQ KSTGSGGKKR GPAQLRVYNL GNTSPVPVGT LVSILEGLLK TKAKKHVIKM PSNGDVPFTH ANVSLAFRDF
401: AYKPTTDLST GLSKFVKWYL GYYGLQPSLK KDNHLHNIE
101: GLTVLVTGAA GFVGSHCSLA LKKRGDGVLG LDNFNNYYDP FLNAPGRQCS GNTKCSSWKK LFDLVPFTHI LHLAAQAGVR YAMQNPQSYV TANIAGFVNL
201: LEAAKSANPQ PAIVWASSSS VYGLNTQNPF SELHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTKD ILHGKTIDVY
301: QTPEGKQVAR DFTYIDDIVK GCLGALDSAQ KSTGSGGKKR GPAQLRVYNL GNTSPVPVGT LVSILEGLLK TKAKKHVIKM PSNGDVPFTH ANVSLAFRDF
401: AYKPTTDLST GLSKFVKWYL GYYGLQPSLK KDNHLHNIE
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.