CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, golgi, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03995	Soybean	plastid	92.82	64.24
KRH77471	Soybean	cytosol, endoplasmic reticulum	81.34	61.15
KRH57441	Soybean	cytosol	63.64	42.77
KRH43408	Soybean	nucleus	79.9	25.0
KRH13001	Soybean	cytosol, mitochondrion, plastid	79.43	24.85
KRH21867	Soybean	cytosol, mitochondrion, plastid	78.47	24.51
KRH27429	Soybean	cytosol, mitochondrion, plastid	77.51	24.22
KRH04933	Soybean	cytosol, mitochondrion, plastid	72.73	23.6
KRH16155	Soybean	cytosol	73.68	23.51
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	58.85	18.64
KRH46062	Soybean	cytosol	47.85	16.34
KRH26241	Soybean	cytosol	3.83	15.09
KRH00406	Soybean	cytosol, mitochondrion, nucleus	3.83	11.59
KRG99450	Soybean	cytosol, mitochondrion, nucleus	3.83	11.59
KRH11871	Soybean	golgi, plastid	7.18	3.61
KRH36892	Soybean	golgi, mitochondrion	6.7	3.37
KRH60045	Soybean	extracellular	5.26	3.14
KRH41129	Soybean	nucleus	5.26	3.14
KRH41316	Soybean	extracellular, golgi	5.26	3.14
KRH43065	Soybean	golgi, mitochondrion, plastid	6.22	3.12
KRH27832	Soybean	plastid	5.74	3.09
KRH77652	Soybean	plastid	5.74	3.07
KRH58854	Soybean	endoplasmic reticulum, golgi	5.74	2.88
KRH59194	Soybean	golgi, mitochondrion	5.74	2.88
KRH59827	Soybean	extracellular, golgi	4.78	2.86
KRH51264	Soybean	plastid	4.78	2.85
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	5.74	2.78
KRH02967	Soybean	nucleus	5.74	2.78
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	5.26	2.56
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	5.26	2.56
KRG97348	Soybean	endoplasmic reticulum	5.26	2.51
KRH40009	Soybean	plastid	4.78	2.46
KRH42756	Soybean	extracellular, golgi, plastid	5.74	2.43
KRH31569	Soybean	mitochondrion	5.26	2.38
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	4.31	2.05
KRH76209	Soybean	endoplasmic reticulum, plastid	4.31	2.05

Protein Annotations

EMBL:ACUP02002823	EnsemblPlants:KRH57264	EnsemblPlantsGene:GLYMA_05G050500	EntrezGene:100801553	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR10366	PANTHER:PTHR10366:SF405	PFAM:PF04321	ProteinID:KRH57264	ProteinID:KRH57264.1
SUPFAM:SSF51735	UniParc:UPI00023C4325	UniProt:I1K0E4	MapMan:3.13.6.1	:	:

Description

hypothetical protein

Coordinates

chr5:-:4518670..4519767

Molecular Weight (calculated)

23084.4 Da

IEP (calculated)

5.552

GRAVY (calculated)

-0.146

Length

209 amino acids

Sequence
(BLAST)

001: MDFPANGASA AHSLNFLIYG RAGWIGGLLG TLCRAQGIPF QYGSGRLQNR ASLQADIAQL KPTHVFNAAG VTGRPNVDWC ESHKVETIRT NVIGTLTLAD
101: VCRDHGLILI NYATDCIFEY DSDHPLGSGI GFKETDIPNS MTILDELLPI SIEMGKRNLT GIWNFTNPGV VSHNEILEMY RDYVDPNFTW KNFTLEEQAK
201: VIVAPRSNN

Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)

001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT

Arabidopsis Description

RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [peroxisome,extracellular,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.