Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- endoplasmic reticulum 2
- golgi 3
- extracellular 1
- vacuole 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02967 | Soybean | nucleus | 98.14 | 98.14 |
| Bra011194.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi, plastid | 87.7 | 88.11 |
| CDY28188 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 87.7 | 88.11 |
| CDY70926 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 87.7 | 88.11 |
| AT4G30440.1 | Thale cress | cytosol, endoplasmic reticulum, golgi, plastid | 87.7 | 88.11 |
| CDX72242 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 87.47 | 87.67 |
| CDY39205 | Canola | cytosol, endoplasmic reticulum, golgi, plastid | 87.24 | 87.44 |
| Bra024075.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi, plastid | 86.77 | 86.98 |
| PGSC0003DMT400029181 | Potato | cytosol, golgi, peroxisome | 84.92 | 86.12 |
| Solyc07g006220.1.1 | Tomato | nucleus | 83.99 | 85.18 |
| PGSC0003DMT400020223 | Potato | endoplasmic reticulum | 83.53 | 83.53 |
| GSMUA_Achr4P02040_001 | Banana | endoplasmic reticulum | 77.26 | 82.43 |
| Solyc12g010540.1.1 | Tomato | endoplasmic reticulum | 82.37 | 82.18 |
| Os02t0791500-01 | Rice | endoplasmic reticulum, golgi, plastid | 82.6 | 81.46 |
| EES05940 | Sorghum | endoplasmic reticulum, golgi, plastid | 82.83 | 81.32 |
| Zm00001d018350_P001 | Maize | plasma membrane | 82.37 | 80.87 |
| GSMUA_Achr3P04850_001 | Banana | endoplasmic reticulum | 77.49 | 80.68 |
| HORVU5Hr1G060660.3 | Barley | mitochondrion | 73.55 | 80.66 |
| GSMUA_Achr9P13500_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 77.49 | 80.48 |
| TraesCS6D01G335600.1 | Wheat | plastid | 81.44 | 80.14 |
| TraesCS6B01G385900.1 | Wheat | plastid | 81.44 | 80.14 |
| TraesCS6A01G353200.1 | Wheat | plastid | 81.44 | 80.14 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, golgi | 74.48 | 79.26 |
| Os06t0187200-01 | Rice | golgi, peroxisome | 56.61 | 78.96 |
| TraesCS7D01G154100.1 | Wheat | golgi | 78.89 | 78.52 |
| Zm00001d037087_P001 | Maize | endoplasmic reticulum | 79.12 | 77.5 |
| TraesCS7B01G056200.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 79.58 | 77.43 |
| TraesCS7A01G152300.1 | Wheat | endoplasmic reticulum | 79.58 | 77.43 |
| OQU75981 | Sorghum | endoplasmic reticulum | 78.89 | 77.27 |
| Zm00001d045078_P001 | Maize | extracellular, golgi | 73.78 | 77.0 |
| KRH76209 | Soybean | endoplasmic reticulum, plastid | 67.98 | 66.89 |
| KRH04016 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 66.13 | 66.28 |
| KRH65316 | Soybean | cytosol, endoplasmic reticulum, golgi, plastid | 67.29 | 66.21 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi, nucleus | 58.93 | 65.97 |
| KRH57292 | Soybean | endoplasmic reticulum, golgi, mitochondrion, plastid | 65.2 | 65.5 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 62.88 | 65.14 |
| GSMUA_Achr7P16250_001 | Banana | cytosol, endoplasmic reticulum, golgi | 74.94 | 63.21 |
| KRH40009 | Soybean | plastid | 59.4 | 62.9 |
| KRG97348 | Soybean | endoplasmic reticulum | 61.95 | 60.82 |
| KRH31569 | Soybean | mitochondrion | 64.04 | 59.74 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 63.34 | 55.38 |
| KRH51264 | Soybean | plastid | 22.27 | 27.35 |
| KRH41316 | Soybean | extracellular, golgi | 21.11 | 26.0 |
| KRH59827 | Soybean | extracellular, golgi | 21.11 | 26.0 |
| KRH60045 | Soybean | extracellular | 20.88 | 25.71 |
| KRH41129 | Soybean | nucleus | 20.88 | 25.71 |
| KRG99450 | Soybean | cytosol, mitochondrion, nucleus | 3.94 | 24.64 |
| KRH00406 | Soybean | cytosol, mitochondrion, nucleus | 3.94 | 24.64 |
| KRH26241 | Soybean | cytosol | 3.02 | 24.53 |
| KRH43065 | Soybean | golgi, mitochondrion, plastid | 22.97 | 23.8 |
| KRH11871 | Soybean | golgi, plastid | 22.74 | 23.61 |
| KRH77652 | Soybean | plastid | 21.11 | 23.27 |
| KRH36892 | Soybean | golgi, mitochondrion | 22.27 | 23.13 |
| KRH59194 | Soybean | golgi, mitochondrion | 22.27 | 23.08 |
| KRH27832 | Soybean | plastid | 20.42 | 22.68 |
| KRH21867 | Soybean | cytosol, mitochondrion, plastid | 22.04 | 14.2 |
| KRH27429 | Soybean | cytosol, mitochondrion, plastid | 22.04 | 14.2 |
| KRH13001 | Soybean | cytosol, mitochondrion, plastid | 21.58 | 13.92 |
| KRH43408 | Soybean | nucleus | 21.58 | 13.92 |
| KRG98907 | Soybean | cytosol, mitochondrion, peroxisome | 20.88 | 13.64 |
| KRH46062 | Soybean | cytosol | 19.26 | 13.56 |
| KRH04933 | Soybean | cytosol, mitochondrion, plastid | 19.49 | 13.04 |
| KRH16155 | Soybean | cytosol | 19.26 | 12.67 |
| KRH57264 | Soybean | endoplasmic reticulum | 2.78 | 5.74 |
| KRH03995 | Soybean | plastid | 3.25 | 4.64 |
| KRH77471 | Soybean | cytosol, endoplasmic reticulum | 2.78 | 4.32 |
| KRH57441 | Soybean | cytosol | 2.32 | 3.22 |
Protein Annotations
| EntrezGene:100795967 | MapMan:3.13.4.1 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | EMBL:ACUP02001204 | EnsemblPlantsGene:GLYMA_02G208000 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016857 | UniProt:I1JGU4 | EnsemblPlants:KRH72376 | ProteinID:KRH72376 |
| ProteinID:KRH72376.1 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF16363 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF17 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0002337565 | SEG:seg |
Description
hypothetical protein
Coordinates
chr2:-:39276566..39279261
Molecular Weight (calculated)
47655.0 Da
IEP (calculated)
9.946
GRAVY (calculated)
-0.223
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLEEELFP STPGKFKIER AHHMNRQLYR CFASTSTMFL WALFLIALTA SYLSFQGFVD SGSRYLSASW GGIQWEKQVR TSAQIHRQGG MSVLVTGAAG
101: FVGSHVSLAL KRRGDGVVGL DNFNDYYDPS LKKARKSLLA KHDVFIVDGD LNDAKLLAKL FDVVAFTHVM HLAAQAGVRY AMENPHSYVH SNIAGLVTLL
201: EACKSANPQP AVVWASSSSV YGLNEKVPFS ESDQTDRPAS LYAATKKAGE EITHTYNHIY GLSITGLRFF TVYGPWGRPD MAYFSFTRNI LQGKPITVYR
301: GKNHVDLARD FTYIDDIVKG CVGSLDTSAK STGSGGKKRG PAPYRIFNLG NTSPVTVPTL VSILERHLKV KAKRNIVDMP GNGDVPFTHA NISSARRELG
401: YKPTTDLQTG LKKFVKWYLS YYGYNHGKPV N
101: FVGSHVSLAL KRRGDGVVGL DNFNDYYDPS LKKARKSLLA KHDVFIVDGD LNDAKLLAKL FDVVAFTHVM HLAAQAGVRY AMENPHSYVH SNIAGLVTLL
201: EACKSANPQP AVVWASSSSV YGLNEKVPFS ESDQTDRPAS LYAATKKAGE EITHTYNHIY GLSITGLRFF TVYGPWGRPD MAYFSFTRNI LQGKPITVYR
301: GKNHVDLARD FTYIDDIVKG CVGSLDTSAK STGSGGKKRG PAPYRIFNLG NTSPVTVPTL VSILERHLKV KAKRNIVDMP GNGDVPFTHA NISSARRELG
401: YKPTTDLQTG LKKFVKWYLS YYGYNHGKPV N
001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH
Arabidopsis Description
GAE1GAE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXF7]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.