CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13001	Soybean	cytosol, mitochondrion, plastid	97.75	97.75
KRH27429	Soybean	cytosol, mitochondrion, plastid	92.22	92.08
KRH21867	Soybean	cytosol, mitochondrion, plastid	91.92	91.78
KRH57441	Soybean	cytosol	42.37	91.0
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	89.22	88.3
Solyc07g062130.2.1	Tomato	extracellular, unclear	87.43	86.65
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	86.83	86.05
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	83.98	84.11
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	83.98	84.11
GSMUA_Achr4P02550_001	Banana	mitochondrion	56.44	82.68
KRH03995	Soybean	plastid	36.23	80.13
KRH57264	Soybean	endoplasmic reticulum	25.0	79.9
KXG21627	Sorghum	mitochondrion	82.04	79.88
Zm00001d037784_P002	Maize	endoplasmic reticulum	82.48	79.17
HORVU5Hr1G007050.2	Barley	plastid	83.98	77.38
KRH16155	Soybean	cytosol	75.75	77.25
KRH77471	Soybean	cytosol, endoplasmic reticulum	32.04	76.98
KRH04933	Soybean	cytosol, mitochondrion, plastid	73.8	76.55
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	74.7	75.61
KRH46062	Soybean	cytosol	66.77	72.88
CDX81794	Canola	plastid	35.63	68.59
KRH60045	Soybean	extracellular	12.57	24.0
KRH41316	Soybean	extracellular, golgi	12.57	24.0
KRH51264	Soybean	plastid	12.57	23.93
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	14.52	22.56
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	14.37	22.38
KRH41129	Soybean	nucleus	11.53	22.0
KRH59827	Soybean	extracellular, golgi	11.53	22.0
KRH27832	Soybean	plastid	12.57	21.65
KRH58854	Soybean	endoplasmic reticulum, golgi	13.47	21.63
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	13.92	21.58
KRH02967	Soybean	nucleus	13.92	21.58
KRH77652	Soybean	plastid	12.57	21.48
KRH11871	Soybean	golgi, plastid	13.17	21.2
KRH40009	Soybean	plastid	12.87	21.13
KRH65316	Soybean	cytosol, endoplasmic reticulum, golgi, plastid	13.77	21.0
KRH36892	Soybean	golgi, mitochondrion	13.02	20.96
KRH76209	Soybean	endoplasmic reticulum, plastid	13.62	20.78
KRH26241	Soybean	cytosol	1.65	20.75
KRH43065	Soybean	golgi, mitochondrion, plastid	12.87	20.67
KRH00406	Soybean	cytosol, mitochondrion, nucleus	2.1	20.29
KRG99450	Soybean	cytosol, mitochondrion, nucleus	2.1	20.29
KRH59194	Soybean	golgi, mitochondrion	12.43	19.95
KRG97348	Soybean	endoplasmic reticulum	13.02	19.82
KRH31569	Soybean	mitochondrion	13.47	19.48
KRH42756	Soybean	extracellular, golgi, plastid	13.17	17.85

Protein Annotations

KEGG:00521+4.2.1.46	KEGG:00523+4.2.1.46	KEGG:00525+4.2.1.46	EntrezGene:100803187	MapMan:3.13.6.1	Gene3D:3.40.50.720
Gene3D:3.90.25.10	EMBL:ACUP02004855	EMBL:ACUP02004856	EnsemblPlantsGene:GLYMA_08G148100	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008460	GO:GO:0009225
GO:GO:0009987	GO:GO:0050662	UniProt:I1KTG8	EnsemblPlants:KRH43408	ProteinID:KRH43408	ProteinID:KRH43408.1
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	PFAM:PF04321	PFAM:PF16363	PANTHER:PTHR43000	PANTHER:PTHR43000:SF8
MetaCyc:PWY-3221	MetaCyc:PWY-6808	MetaCyc:PWY-6942	MetaCyc:PWY-6953	MetaCyc:PWY-6973	MetaCyc:PWY-6974
MetaCyc:PWY-6976	MetaCyc:PWY-7104	MetaCyc:PWY-7301	MetaCyc:PWY-7312	MetaCyc:PWY-7315	MetaCyc:PWY-7316
MetaCyc:PWY-7318	MetaCyc:PWY-7413	MetaCyc:PWY-7414	MetaCyc:PWY-7440	MetaCyc:PWY-7657	MetaCyc:PWY-7688
MetaCyc:PWY-7814	InterPro:RmlD-like-bd	SUPFAM:SSF51735	TIGRFAMs:TIGR01181	UniParc:UPI00023380EB	InterPro:dTDP_Gluc_deHydtase
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:11290122..11297688

Molecular Weight (calculated)

75368.1 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.357

Length

668 amino acids

Sequence
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLVRSY PDYKIVVLDK LDYCSSLKNL LPSKSSPNFK FVKGDIGSAD LVNYLLITES IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETE EDAVVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMQG KNLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVVD VAKDICRLFS MDPETCIKFV ENRPFNDQRY FLDDQKLKDL
301: GWSERTTWEE GLKKTMDWYI NNPDWWGDVT GALLPHPRML MMPGGLERHF EGSEEGKPAS FGSSNTRIVV PSSKNTSSQQ KHPFMFLIYG RTGWIGGLLG
401: KLCEKQGIPY EYGKGRLEDR SSLLADLQNV KPTHVFNAAG VTGRPNVDWC ESHKTETIRT NVAGTLTMAD VCREHGILMI NYATGCIFEY NATHPEGSGI
501: GFKEEDKPNF IGSFYSKTKA MVEELLRDYD NVCTLRVRMP ISSDLSNPRN FITKISRYNK VVNIPNSMTI LDELLPISIE MAKRNLKGIW NFTNPGVVSH
601: NEILEMYRDY IDPNFKWSNF TLEEQAKVIV APRSNNEMDA SKLKTEFPEL LSIKESLIKY VFEPNKKT

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.