Factsheet for TraesCS5B01G023700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G032700.1	Wheat	cytosol, mitochondrion, plastid	99.55	99.55
HORVU5Hr1G007050.2	Barley	plastid	98.95	91.03
KXG21627	Sorghum	mitochondrion	89.36	86.88
Zm00001d037784_P002	Maize	endoplasmic reticulum	89.95	86.21
VIT_19s0014g00290.t01	Wine grape	cytosol, mitochondrion, plastid	85.91	84.89
KRH21867	Soybean	cytosol, mitochondrion, plastid	85.01	84.75
KRH27429	Soybean	cytosol, mitochondrion, plastid	85.01	84.75
KRH13001	Soybean	cytosol, mitochondrion, plastid	84.86	84.73
GSMUA_Achr4P02550_001	Banana	mitochondrion	57.57	84.21
KRH43408	Soybean	nucleus	84.11	83.98
Solyc07g062130.2.1	Tomato	extracellular, unclear	84.11	83.23
PGSC0003DMT400018192	Potato	cytosol, mitochondrion, plastid	82.91	82.05
TraesCS4B01G205100.3	Wheat	mitochondrion	83.51	81.67
TraesCS6B01G267600.1	Wheat	peroxisome	35.08	78.0
KRG98907	Soybean	cytosol, mitochondrion, peroxisome	74.51	75.3
KRH46062	Soybean	cytosol	67.47	73.53
TraesCS1B01G327200.1	Wheat	peroxisome	39.88	72.28
CDX81794	Canola	plastid	33.88	65.13
TraesCS1B01G478400.1	Wheat	endoplasmic reticulum, golgi	12.14	22.88
TraesCS5B01G315700.1	Wheat	cytosol	12.59	22.83
TraesCS5B01G181300.1	Wheat	plastid	12.59	22.4
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	13.64	20.54
TraesCS5B01G290300.1	Wheat	mitochondrion	12.89	20.43
TraesCS7B01G210700.2	Wheat	golgi	12.59	20.34
TraesCS6B01G385900.1	Wheat	plastid	13.34	20.32
TraesCS2B01G482000.1	Wheat	golgi	12.29	19.9
TraesCS5B01G280700.1	Wheat	endoplasmic reticulum	13.34	18.62
TraesCS4B01G223700.1	Wheat	plastid	13.49	18.33
TraesCS7B01G153900.1	Wheat	plastid	13.34	18.09

Protein Annotations

EnsemblPlants:TraesCS5B01G023700.1	EnsemblPlantsGene:TraesCS5B01G023700	Gene3D:3.40.50.720	Gene3D:3.90.25.10	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:RmlD-like-bd	PANTHER:PTHR43000	PANTHER:PTHR43000:SF15	PFAM:PF04321	PFAM:PF16363	SUPFAM:SSF51735
TIGR:cd05246	TIGR:cd05254	MapMan:3.13.6.1	:	:	:

Description

No Description!

Coordinates

chr5B:-:21749601..21751802

Molecular Weight (calculated)

75394.3 Da

IEP (calculated)

6.915

GRAVY (calculated)

-0.330

Length

667 amino acids

Sequence
(BLAST)

001: MATPYTPKSI LITGAAGFIA SHVTNRIVRN YPDYKIVVLD KLDYCSNLKN LLPASSSPNF KFVKGDIASA DLVNFLLVTE NIDTIMHFAA QTHVDNSFGN
101: SFEFTKNNIY GTHVLLEACK VTGQIRRFIH VSTDEVYGET DEDAVVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKL
201: IPKFILLAMR GKPLPIHGDG SNVRSYLYCE DVAEAFEVIL HRGEVGHVYN IGTKRERTVT DVAKDVCRLF NLEADKVIQL VDNRPFNDQR YFLDDEKLKS
301: LGWSERTRWE EGLRKTMEWY VANSDYWGDV SGALLPHPRT LMMPGYEGSE EIKGMLNLFT NNQTKMVAPT SESSSQTRLL KFLIYGRTGW IGGLLGKICE
401: KQGIPYEYGK GRLEERFSIV LDIQTVKPTH VFNAAGVTGR PNVDWCESHK PDTIRTNVVG TLTLADVCRE HGLLVMNYAT GCIFEYDANH PEGSGIGFKE
501: EDKPNFTGSF YSKTKAMVEE LLKEYENVCT LRVRMPISSD LNNPRNFITK ISRYDKVVNI PNSMTVLDEL LPISVEMAKR NLRGIWNFTN PGVVSHNEIL
601: EMYKKYMDPS YKWTNFTLEE QAKVIVAPRS NNEMDATKLK REFPELLSIK DSLIKYVFEP NRKVPAT

Best Arabidopsis Sequence Match ( AT1G78570.1 )
(BLAST)

001: MASYTPKNIL ITGAAGFIAS HVANRLIRSY PDYKIVVLDK LDYCSNLKNL NPSKHSPNFK FVKGDIASAD LVNHLLITEG IDTIMHFAAQ THVDNSFGNS
101: FEFTKNNIYG THVLLEACKV TGQIRRFIHV STDEVYGETD EDALVGNHEA SQLLPTNPYS ATKAGAEMLV MAYGRSYGLP VITTRGNNVY GPNQFPEKLI
201: PKFILLAMRG QVLPIHGDGS NVRSYLYCED VAEAFEVVLH KGEVGHVYNI GTKKERRVND VAKDICKLFN MDPEANIKFV DNRPFNDQRY FLDDQKLKKL
301: GWSERTTWEE GLKKTMDWYT QNPEWWGDVS GALLPHPRML MMPGGRHFDG SEDNSLAATL SEKPSQTHMV VPSQRSNGTP QKPSLKFLIY GKTGWIGGLL
401: GKICDKQGIA YEYGKGRLED RSSLLQDIQS VKPTHVFNSA GVTGRPNVDW CESHKTETIR ANVAGTLTLA DVCREHGLLM MNFATGCIFE YDDKHPEGSG
501: IGFKEEDTPN FTGSFYSKTK AMVEELLKEY DNVCTLRVRM PISSDLNNPR NFITKISRYN KVVNIPNSMT VLDELLPISI EMAKRNLKGI WNFTNPGVVS
601: HNEILEMYRD YINPEFKWAN FTLEEQAKVI VAPRSNNEMD ASKLKKEFPE LLSIKESLIK YAYGPNKKT

Arabidopsis Description

RHM1Trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM5]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.