Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G314800.1 | |
| TraesCS5B01G315700.1 | |
| TraesCS5D01G321100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12780.1 | TraesCS5A01G314800.1 | AT1G12780.1 | 21798944 |
| AT1G12780.1 | TraesCS5B01G315700.1 | AT1G12780.1 | 21798944 |
| AT1G12780.1 | TraesCS5D01G321100.1 | AT1G12780.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G321100.1 | Wheat | cytosol | 98.64 | 98.37 |
| TraesCS5A01G314800.1 | Wheat | cytosol | 98.37 | 98.37 |
| HORVU5Hr1G080860.10 | Barley | mitochondrion | 97.28 | 84.43 |
| KXG36042 | Sorghum | cytosol | 79.62 | 80.49 |
| Zm00001d021249_P003 | Maize | cytosol | 79.35 | 80.44 |
| KRH00406 | Soybean | cytosol, mitochondrion, nucleus | 14.4 | 76.81 |
| Os09t0526700-01 | Rice | cytosol | 77.17 | 76.14 |
| KRG99450 | Soybean | cytosol, mitochondrion, nucleus | 14.13 | 75.36 |
| KRH41129 | Soybean | nucleus | 68.75 | 72.29 |
| KRH59827 | Soybean | extracellular, golgi | 68.75 | 72.29 |
| CDY31278 | Canola | cytosol | 68.48 | 71.79 |
| Bra016757.1-P | Field mustard | cytosol | 68.48 | 71.79 |
| CDY21065 | Canola | cytosol | 68.21 | 71.51 |
| AT1G12780.1 | Thale cress | cytoskeleton, cytosol, peroxisome | 68.21 | 71.51 |
| GSMUA_Achr1P18740_001 | Banana | cytosol | 68.48 | 71.19 |
| CDY47346 | Canola | cytosol | 67.12 | 70.37 |
| CDY49193 | Canola | cytosol | 67.12 | 70.37 |
| GSMUA_Achr5P13620_001 | Banana | cytosol | 66.58 | 69.8 |
| Bra027626.1-P | Field mustard | cytosol | 66.58 | 69.8 |
| CDY69000 | Canola | cytosol | 63.32 | 69.55 |
| Bra019785.1-P | Field mustard | cytosol | 63.32 | 69.55 |
| AT1G63180.1 | Thale cress | cytosol | 66.3 | 69.52 |
| VIT_02s0025g04210.t01 | Wine grape | cytosol | 66.03 | 69.43 |
| Solyc08g080570.2.1 | Tomato | cytosol | 66.03 | 69.23 |
| PGSC0003DMT400007898 | Potato | cytosol | 65.76 | 68.95 |
| KRH51264 | Soybean | plastid | 65.22 | 68.38 |
| Bra039253.1-P | Field mustard | cytosol | 64.13 | 68.01 |
| TraesCS1B01G478400.1 | Wheat | endoplasmic reticulum, golgi | 61.68 | 64.12 |
| TraesCS5B01G181300.1 | Wheat | plastid | 59.51 | 58.4 |
| CDY60264 | Canola | plastid | 67.66 | 40.75 |
| TraesCS2B01G482000.1 | Wheat | golgi | 37.23 | 33.25 |
| TraesCS5B01G290300.1 | Wheat | mitochondrion | 37.77 | 33.02 |
| TraesCS7B01G210700.2 | Wheat | golgi | 36.68 | 32.69 |
| TraesCS7B01G056200.1 | Wheat | endoplasmic reticulum, golgi, peroxisome | 26.9 | 22.35 |
| TraesCS6B01G385900.1 | Wheat | plastid | 24.46 | 20.55 |
| TraesCS4B01G223700.1 | Wheat | plastid | 25.27 | 18.94 |
| TraesCS1B01G327200.1 | Wheat | peroxisome | 18.75 | 18.75 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 23.37 | 17.99 |
| TraesCS7B01G153900.1 | Wheat | plastid | 23.91 | 17.89 |
| TraesCS5B01G023700.1 | Wheat | cytosol, mitochondrion, plastid | 22.83 | 12.59 |
| TraesCS4B01G205100.3 | Wheat | mitochondrion | 23.1 | 12.46 |
| TraesCS6B01G267600.1 | Wheat | peroxisome | 2.45 | 3.0 |
Protein Annotations
| KEGG:00052+5.1.3.2 | KEGG:00520+5.1.3.2 | MapMan:3.13.8 | Gene3D:3.40.50.720 | Gene3D:3.90.25.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003978 | GO:GO:0005975 | GO:GO:0006012 | GO:GO:0008150 | GO:GO:0008152 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PFAM:PF16363 | PANTHER:PTHR43725 | PANTHER:PTHR43725:SF9 | SUPFAM:SSF51735 |
| TIGRFAMs:TIGR01179 | EnsemblPlantsGene:TraesCS5B01G315700 | EnsemblPlants:TraesCS5B01G315700.1 | InterPro:UDP_G4E | TIGR:cd05247 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:497903779..497905644
Molecular Weight (calculated)
40427.2 Da
IEP (calculated)
7.092
GRAVY (calculated)
-0.316
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIGGVGAGG GAGGAEAQGR SVLVTGGAGF IGTHTVLQLL EKGYAVTVVD NFHNSVPEAL DRVRHIVGPA LSARLQFIFG DLTIKDDLEK VFAAKRYDAV
101: IHFAGLKAVA ESVAHPEMYN RNNIVGTVNL YDVMKKHGCN KLVFSSSATV YGQPEKVPCF EDSPLKALNP YGRTKLYLEE MLRDYQHANP EWRTILLRYF
201: NPIGAHESGD IGEDPKGVPN NLLPYIQQVA VGRRPELNVY GHDYRTRDGT AVRDYIHVVD LADGHIAALE KLFATPDIGC VAYNLGTGRG TTVLEMVSAF
301: EKAYGKKIPV KMCPRRPGDS EQVYASTAKA EEELGWRAKY GIEEMCRDQW NWAKKNPYGY CGNAENKD
101: IHFAGLKAVA ESVAHPEMYN RNNIVGTVNL YDVMKKHGCN KLVFSSSATV YGQPEKVPCF EDSPLKALNP YGRTKLYLEE MLRDYQHANP EWRTILLRYF
201: NPIGAHESGD IGEDPKGVPN NLLPYIQQVA VGRRPELNVY GHDYRTRDGT AVRDYIHVVD LADGHIAALE KLFATPDIGC VAYNLGTGRG TTVLEMVSAF
301: EKAYGKKIPV KMCPRRPGDS EQVYASTAKA EEELGWRAKY GIEEMCRDQW NWAKKNPYGY CGNAENKD
001: MGSSVEQNIL VTGGAGFIGT HTVVQLLKDG FKVSIIDNFD NSVIEAVDRV RELVGPDLSK KLDFNLGDLR NKGDIEKLFS KQRFDAVIHF AGLKAVGESV
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
101: ENPRRYFDNN LVGTINLYET MAKYNCKMMV FSSSATVYGQ PEKIPCMEDF ELKAMNPYGR TKLFLEEIAR DIQKAEPEWR IILLRYFNPV GAHESGSIGE
201: DPKGIPNNLM PYIQQVAVGR LPELNVYGHD YPTEDGSAVR DYIHVMDLAD GHIAALRKLF ADPKIGCTAY NLGTGQGTSV LEMVAAFEKA SGKKIPIKLC
301: PRRSGDATAV YASTEKAEKE LGWKAKYGVD EMCRDQWKWA NNNPWGYQNK L
Arabidopsis Description
UGE1Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42605]
SUBAcon: [peroxisome,cytoskeleton,cytosol]
SUBAcon: [peroxisome,cytoskeleton,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.