Factsheet for TraesCS4B01G223700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	endoplasmic reticulum, golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G224000.1	Wheat	plastid	97.56	99.38
TraesCS4A01G080300.1	Wheat	plastid	96.13	98.74
EER95171	Sorghum	plastid	91.04	93.12
Zm00001d028427_P001	Maize	plastid	90.43	92.69
HORVU4Hr1G063010.1	Barley	peroxisome	96.54	92.22
Os03t0249500-01	Rice	plastid	90.43	91.74
Zm00001d047915_P001	Maize	plastid	89.21	91.44
VIT_02s0241g00180.t01	Wine grape	cytosol, plastid	35.03	72.88
GSMUA_Achr4P17900_001	Banana	endoplasmic reticulum, mitochondrion, peroxisome	62.93	71.86
GSMUA_Achr5P18760_001	Banana	endoplasmic reticulum, golgi, mitochondrion	66.19	70.81
VIT_00s1525g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	59.47	67.13
VIT_00s2240g00010.t01	Wine grape	cytosol, endoplasmic reticulum, golgi, plastid	52.75	66.75
PGSC0003DMT400059215	Potato	plastid	30.14	66.37
KRH57292	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	57.64	65.97
KRH04016	Soybean	endoplasmic reticulum, golgi, mitochondrion, plastid	57.64	65.81
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	58.04	65.52
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	57.84	65.44
AT4G12250.1	Thale cress	cytosol, endoplasmic reticulum, golgi	57.84	65.14
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	57.64	65.06
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	56.82	65.03
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	56.82	65.03
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	56.82	65.03
VIT_16s0022g01450.t01	Wine grape	mitochondrion	52.34	62.99
KRH40009	Soybean	plastid	51.93	62.65
TraesCS6B01G385900.1	Wheat	plastid	54.99	61.64
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	54.38	60.27
Solyc08g079440.1.1	Tomato	nucleus	53.97	59.55
PGSC0003DMT400010106	Potato	cytosol, endoplasmic reticulum, golgi, plastid	53.36	58.74
TraesCS5B01G280700.1	Wheat	endoplasmic reticulum	54.18	55.65
TraesCS7B01G153900.1	Wheat	plastid	54.99	54.88
TraesCS1B01G478400.1	Wheat	endoplasmic reticulum, golgi	18.53	25.71
TraesCS5B01G315700.1	Wheat	cytosol	18.94	25.27
TraesCS5B01G181300.1	Wheat	plastid	18.53	24.27
TraesCS1B01G327200.1	Wheat	peroxisome	16.09	21.47
TraesCS7B01G210700.2	Wheat	golgi	17.31	20.58
TraesCS5B01G290300.1	Wheat	mitochondrion	17.52	20.43
TraesCS2B01G482000.1	Wheat	golgi	17.11	20.39
TraesCS5B01G023700.1	Wheat	cytosol, mitochondrion, plastid	18.33	13.49
TraesCS4B01G205100.3	Wheat	mitochondrion	18.13	13.05
TraesCS6B01G267600.1	Wheat	peroxisome	2.24	3.67

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0005802
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016857	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
InterPro:Nuc_sugar_epim	PFAM:PF16363	PRINTS:PR01713	PANTHER:PTHR43574	PANTHER:PTHR43574:SF22	SUPFAM:SSF51735
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4B01G223700	EnsemblPlants:TraesCS4B01G223700.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:-:468050260..468051994

Molecular Weight (calculated)

52601.8 Da

IEP (calculated)

10.421

GRAVY (calculated)

-0.183

Length

491 amino acids

Sequence
(BLAST)

001: MAPQLTGAPG SAAAAGGAAA VKPQFHHYHH HRLPPRHHHP PSLLSKLAFW SVCSLSLLLA FLLLAPSSAP APRASPDSPR RSLHAHPDSA ATWGGAAWEK
101: KVRASARVRR PGGRGGLSVL VTGAAGFVGC HAAAGFVGCH AAAALRRRGD GVLGLDNFND YYDPALKRGR AALLARSGVY VVDGDIADAE LLAKLFDVAP
201: FTHVLHLAAQ AGVRHALVDP MSYVRANVAG LVALLEAARA ADPQPAIVWA SSSSVYGLNS HVPFSEHDRT DRPASLYAAT KKAGEEIAHV YNHIYGLSLT
301: ALRFFTVYGP WGRPDMAYFF FTRDILAGRP ITVYESSGGG THQTTISRDF TYIDDIVKGC IGALDTAGRS TGSGGKKRGP APFRTYNLGN TSPVPVTQLV
401: DLLEKMLKVK AVRRVVKMPR NGDVPYTHAN ISLAQRELGY RPSTDLQTGL KKFVRWYLEY YNPELAVKQK QHGSSNGKGS RGRNGSTSSA R

Best Arabidopsis Sequence Match ( AT1G02000.1 )
(BLAST)

001: MSHLDDIPST PGKFKMMDKS PFFLHRTRWQ SSVAKLAFWS LVFFGLLFIF FYRSPISNPD SSRRSLRTYS WGGPAWEKRV RSSARVRTRN GVSVLVTGAA
101: GFVGTHVSAA LKRRGDGVLG LDNFNDYYDT SLKRSRQALL ERSGVFIVEG DINDLSLLKK LFEVVPFTHV MHLAAQAGVR YAMENPGSYV HSNIAGFVNL
201: LEVCKSANPQ PAIVWASSSS VYGLNTKVPF SEKDRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP DMAYFFFTRD ILKGKAISIF
301: EGANHGTVAR DFTYIDDIVK GCLGALDTAE KSTGSGGKKR GAAQLRVFNL GNTSPVPVTD LVSILERLLK VKAKRNMMKL PRNGDVPFTH ANISSAQREF
401: GYKPSTDLQT GLKKFVRWYL GYYKQGGKKV AAAA

Arabidopsis Description

GAE2UDP-glucuronate 4-epimerase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPC1]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.