Factsheet for Bra024075.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 2
endoplasmic reticulum 2
golgi 3
extracellular 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	cytosol
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	98.84	98.84
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	98.6	98.6
AT4G30440.1	Thale cress	cytosol, endoplasmic reticulum, golgi, plastid	96.51	96.74
Bra011194.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	95.81	96.04
KRH02967	Soybean	nucleus	87.44	87.24
KRH72376	Soybean	endoplasmic reticulum, mitochondrion	86.98	86.77
PGSC0003DMT400029181	Potato	cytosol, golgi, peroxisome	83.26	84.24
Solyc07g006220.1.1	Tomato	nucleus	82.56	83.53
PGSC0003DMT400020223	Potato	endoplasmic reticulum	80.7	80.51
GSMUA_Achr4P02040_001	Banana	endoplasmic reticulum	74.88	79.7
Solyc12g010540.1.1	Tomato	endoplasmic reticulum	80.0	79.63
GSMUA_Achr3P04850_001	Banana	endoplasmic reticulum	76.51	79.47
Os02t0791500-01	Rice	endoplasmic reticulum, golgi, plastid	80.23	78.95
GSMUA_Achr9P13500_001	Banana	cytosol, endoplasmic reticulum, golgi, plastid	75.58	78.31
HORVU5Hr1G060660.3	Barley	mitochondrion	71.16	77.86
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	79.3	77.68
Zm00001d018350_P001	Maize	plasma membrane	79.07	77.45
TraesCS6D01G335600.1	Wheat	plastid	78.84	77.4
TraesCS6B01G385900.1	Wheat	plastid	78.84	77.4
TraesCS6A01G353200.1	Wheat	plastid	78.84	77.4
Os06t0187200-01	Rice	golgi, peroxisome	55.12	76.7
TraesCS7D01G154100.1	Wheat	golgi	76.28	75.75
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, golgi	71.16	75.56
Zm00001d045078_P001	Maize	extracellular, golgi	72.09	75.06
OQU75981	Sorghum	endoplasmic reticulum	76.51	74.77
Zm00001d037087_P001	Maize	endoplasmic reticulum	76.51	74.77
TraesCS7A01G152300.1	Wheat	endoplasmic reticulum	76.51	74.27
TraesCS7B01G056200.1	Wheat	endoplasmic reticulum, golgi, peroxisome	76.51	74.27
Bra037315.1-P	Field mustard	endoplasmic reticulum, golgi, mitochondrion, plastid	68.84	68.84
Bra000385.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi, plastid	66.98	66.21
Bra033116.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	64.19	64.34
Bra029444.1-P	Field mustard	cytosol, endoplasmic reticulum, peroxisome	64.65	63.91
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi, nucleus	56.98	63.64
GSMUA_Achr7P16250_001	Banana	cytosol, endoplasmic reticulum, golgi	71.16	59.88
Bra014987.1-P	Field mustard	endoplasmic reticulum	63.02	59.69
Bra001923.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	62.33	58.77
Bra028348.1-P	Field mustard	endoplasmic reticulum, golgi, nucleus	62.56	58.48
Bra016757.1-P	Field mustard	cytosol	20.7	25.36
Bra027732.1-P	Field mustard	golgi	19.77	24.78
Bra013744.1-P	Field mustard	cytosol, golgi	20.0	24.71
Bra035262.1-P	Field mustard	golgi	19.77	24.5
Bra019785.1-P	Field mustard	cytosol	19.07	24.48
Bra019257.1-P	Field mustard	plastid	19.53	24.14
Bra027626.1-P	Field mustard	cytosol	19.53	23.93
Bra039253.1-P	Field mustard	cytosol	18.84	23.34
Bra032409.1-P	Field mustard	mitochondrion	21.4	21.96
Bra033746.1-P	Field mustard	golgi	20.93	21.84
Bra020917.1-P	Field mustard	golgi, mitochondrion	20.47	21.41
Bra027557.1-P	Field mustard	golgi	20.23	21.12
Bra030933.1-P	Field mustard	cytosol	8.37	19.46
Bra013466.1-P	Field mustard	mitochondrion	20.47	19.01
Bra005387.1-P	Field mustard	golgi, mitochondrion	20.0	18.94
Bra038127.1-P	Field mustard	cytosol, mitochondrion, peroxisome	20.7	13.32
Bra027310.1-P	Field mustard	cytosol, mitochondrion, peroxisome	20.47	13.23
Bra039675.1-P	Field mustard	cytosol, mitochondrion, peroxisome	20.23	13.08
Bra026009.1-P	Field mustard	cytosol, mitochondrion, plastid	19.77	12.65
Bra021578.1-P	Field mustard	cytosol, mitochondrion, plastid	18.84	12.58
Bra035048.1-P	Field mustard	cytosol, mitochondrion, plastid	19.53	12.54
Bra019776.1-P	Field mustard	cytosol	3.02	4.05
Bra027005.1-P	Field mustard	cytosol	2.79	4.04

Protein Annotations

MapMan:3.13.4.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	EnsemblPlantsGene:Bra024075	EnsemblPlants:Bra024075.1	EnsemblPlants:Bra024075.1-P
InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016857	GO:GO:0050662
UniProt:M4E5M1	InterPro:NAD(P)-bd_dom_sf	InterPro:Nuc_sugar_epim	PFAM:PF01370	PRINTS:PR01713	PANTHER:PTHR43574
PANTHER:PTHR43574:SF17	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0002540E22	SEG:seg	:

Description

AT4G30440 (E=1e-229) GAE1 | GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic

Coordinates

chrA03:-:27820617..27821909

Molecular Weight (calculated)

47607.9 Da

IEP (calculated)

9.958

GRAVY (calculated)

-0.180

Length

430 amino acids

Sequence
(BLAST)

001: MPSIEDELMF PSTPGKFKID RSNRQLNRCF ASTSTMFLWA LFLIALTASY LSFQSFVDSG SRYLTASWGG IQWEKQVRTS AQIHRSGGIS VLVTGATGFV
101: GSHVSLALRK RGDGVVGLDN FNNYYDPSLK RARMSLLSSR WIFVVEGELN DGKLVSKLFD VVAFTHVMHL AAQAGVRYAL ENPQSYVHSN IAGLVNLLET
201: CKAANPQPAV VWASSSSVYG LNEKVPFSES DRTDQPASLY AATKKAGEEI THTYNHIYGL AITGLRFFTV YGPWGRPDMA YFSFTRNILQ GKPITIYRGK
301: NRVDLARDFT FIDDIVKGCL GSLDSSGKST GSGGKKRGAA PYRIFNLGNT SPVTVPILVD ILEKHLKVKA KRNFVEMPGN GDVPFTHANI SSARRECGYN
401: PTTDLETGLK KFVRWYLSYY GYNTKAKLVQ

Best Arabidopsis Sequence Match ( AT4G30440.1 )
(BLAST)

001: MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG
101: SHVSLALRKR GDGVVGLDNF NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE NPQSYVHSNI AGLVNLLEIC
201: KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN
301: RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP
401: TTDLETGLKK FVRWYLSYYG YNTKAKLVH

Arabidopsis Description

GAE1GAE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UXF7]
SUBAcon: [endoplasmic reticulum,golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.