Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P08790_001 | Banana | endoplasmic reticulum, nucleus, peroxisome | 88.04 | 87.84 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 81.72 | 81.72 |
| GSMUA_Achr7P02740_001 | Banana | endoplasmic reticulum | 77.65 | 70.93 |
| KRH58854 | Soybean | endoplasmic reticulum, golgi | 66.14 | 70.43 |
| VIT_05s0029g00420.t01 | Wine grape | endoplasmic reticulum | 70.43 | 69.18 |
| PGSC0003DMT400053071 | Potato | cytosol, endoplasmic reticulum, golgi, plastid | 68.17 | 67.41 |
| Solyc09g092330.1.1 | Tomato | nucleus | 68.62 | 67.26 |
| GSMUA_Achr5P25290_001 | Banana | mitochondrion | 17.61 | 67.24 |
| KRG97348 | Soybean | endoplasmic reticulum | 66.37 | 66.97 |
| KRH31569 | Soybean | mitochondrion | 69.75 | 66.88 |
| CDY18087 | Canola | cytosol, endoplasmic reticulum, golgi | 68.17 | 65.65 |
| Bra028348.1-P | Field mustard | endoplasmic reticulum, golgi, nucleus | 68.17 | 65.65 |
| CDX77481 | Canola | endoplasmic reticulum | 67.04 | 65.56 |
| CDY64583 | Canola | endoplasmic reticulum | 67.95 | 65.43 |
| Bra014987.1-P | Field mustard | endoplasmic reticulum | 67.04 | 65.42 |
| PGSC0003DMT400011867 | Potato | cytosol, endoplasmic reticulum, golgi | 66.82 | 65.2 |
| CDX85133 | Canola | endoplasmic reticulum | 67.04 | 65.13 |
| Bra001923.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 67.04 | 65.13 |
| AT3G23820.1 | Thale cress | endoplasmic reticulum | 67.49 | 65.0 |
| PGSC0003DMT400040718 | Potato | cytosol, endoplasmic reticulum, golgi | 63.66 | 64.98 |
| CDX92990 | Canola | endoplasmic reticulum | 66.82 | 64.91 |
| CDY53207 | Canola | endoplasmic reticulum | 66.59 | 64.84 |
| Zm00001d049804_P001 | Maize | plasma membrane | 65.24 | 64.51 |
| EES14210 | Sorghum | cytosol, extracellular, golgi, plastid | 68.85 | 63.67 |
| Os08t0526100-01 | Rice | plastid | 68.17 | 63.18 |
| Zm00001d031577_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome, plastid | 64.11 | 63.11 |
| Solyc05g053790.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 61.4 | 62.82 |
| Zm00001d021026_P001 | Maize | endoplasmic reticulum | 68.85 | 62.63 |
| TraesCS5B01G280700.1 | Wheat | endoplasmic reticulum | 67.49 | 62.55 |
| EER99141 | Sorghum | cytosol, endoplasmic reticulum, golgi, plastid | 69.75 | 62.55 |
| TraesCS5A01G281600.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 67.49 | 62.03 |
| TraesCS5D01G288700.1 | Wheat | cytosol, endoplasmic reticulum, golgi, plastid | 67.27 | 61.95 |
| TraesCS7D01G257800.1 | Wheat | plastid | 68.4 | 61.84 |
| TraesCS7A01G256600.1 | Wheat | plastid | 68.4 | 61.84 |
| TraesCS7B01G153900.1 | Wheat | plastid | 68.62 | 61.79 |
| GSMUA_Achr4P02040_001 | Banana | endoplasmic reticulum | 55.98 | 61.39 |
| GSMUA_Achr10P... | Banana | cytosol, endoplasmic reticulum, golgi | 55.98 | 61.23 |
| Os09t0504000-01 | Rice | cytosol, endoplasmic reticulum, golgi | 68.4 | 60.84 |
| GSMUA_Achr4P17900_001 | Banana | endoplasmic reticulum, mitochondrion, peroxisome | 58.92 | 60.7 |
| HORVU7Hr1G053260.2 | Barley | plastid | 67.04 | 60.61 |
| GSMUA_Achr3P04850_001 | Banana | endoplasmic reticulum | 56.43 | 60.39 |
| GSMUA_Achr9P13500_001 | Banana | cytosol, endoplasmic reticulum, golgi, plastid | 55.76 | 59.52 |
| KRH42756 | Soybean | extracellular, golgi, plastid | 65.91 | 59.23 |
| HORVU5Hr1G075660.1 | Barley | plastid | 67.27 | 58.66 |
| GSMUA_Achr5P18760_001 | Banana | endoplasmic reticulum, golgi, mitochondrion | 58.47 | 56.43 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi, nucleus | 44.02 | 50.65 |
| GSMUA_Achr7P16250_001 | Banana | cytosol, endoplasmic reticulum, golgi | 57.56 | 49.9 |
| GSMUA_Achr5P04690_001 | Banana | endoplasmic reticulum, golgi, nucleus | 27.99 | 26.84 |
| GSMUA_Achr4P02670_001 | Banana | golgi | 19.41 | 24.64 |
| GSMUA_Achr9P00170_001 | Banana | extracellular, golgi | 18.96 | 24.07 |
| GSMUA_Achr6P22620_001 | Banana | golgi, mitochondrion | 18.51 | 23.5 |
| GSMUA_Achr5P13620_001 | Banana | cytosol | 18.51 | 23.36 |
| GSMUA_Achr1P18740_001 | Banana | cytosol | 18.51 | 23.16 |
| GSMUA_Achr5P09200_001 | Banana | golgi | 18.28 | 22.82 |
| GSMUA_Achr11P... | Banana | cytosol, golgi | 18.28 | 20.72 |
| GSMUA_Achr8P33320_001 | Banana | mitochondrion | 19.41 | 20.62 |
| GSMUA_Achr11P... | Banana | mitochondrion | 18.96 | 20.14 |
| GSMUA_Achr3P23390_001 | Banana | mitochondrion | 18.96 | 20.14 |
| GSMUA_Achr4P31860_001 | Banana | mitochondrion | 17.61 | 18.75 |
| GSMUA_Achr8P27530_001 | Banana | cytosol, golgi, plastid | 17.61 | 18.4 |
| GSMUA_Achr3P16370_001 | Banana | golgi, mitochondrion, plastid | 17.61 | 18.01 |
| GSMUA_Achr9P06140_001 | Banana | plastid | 18.51 | 15.74 |
| GSMUA_Achr6P26620_001 | Banana | plastid | 18.74 | 15.46 |
| GSMUA_Achr4P10430_001 | Banana | cytosol, extracellular, mitochondrion | 18.96 | 12.94 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion, plastid | 16.7 | 11.64 |
| GSMUA_Achr3P31820_001 | Banana | cytosol, mitochondrion, plastid | 15.8 | 11.57 |
| GSMUA_Achr3P31810_001 | Banana | cytosol, mitochondrion, peroxisome | 16.03 | 11.43 |
| GSMUA_Achr4P02550_001 | Banana | mitochondrion | 6.77 | 6.58 |
| GSMUA_Achr4P29060_001 | Banana | cytosol | 2.71 | 5.48 |
| GSMUA_Achr4P29070_001 | Banana | cytosol | 0.68 | 4.55 |
| GSMUA_Achr5P10430_001 | Banana | cytosol | 2.71 | 3.92 |
| GSMUA_Achr1P03840_001 | Banana | cytosol | 2.48 | 3.59 |
Protein Annotations
| MapMan:3.13.4.1 | Gene3D:3.40.50.720 | InterPro:Epimerase_deHydtase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016857 | GO:GO:0050662 | EnsemblPlantsGene:GSMUA_Achr8G00950_001 | EnsemblPlants:GSMUA_Achr8P00950_001 | EnsemblPlants:GSMUA_Achr8T00950_001 | UniProt:M0TLJ7 |
| InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | InterPro:Nuc_sugar_epim | PFAM:PF01370 | PFAM:PF16363 | PRINTS:PR01713 |
| PANTHER:PTHR43574 | PANTHER:PTHR43574:SF10 | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI000296BBDC | SEG:seg |
Description
UDP-glucuronate 4-epimerase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00950_001]
Coordinates
chr8:-:806984..808712
Molecular Weight (calculated)
48075.4 Da
IEP (calculated)
10.043
GRAVY (calculated)
-0.150
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPDTSKS SKLERYNSYL LRRVSSAKLI AASSHLLFRA TILAALILIF LFLLHYPPLL LSSSHYSSSS PHSNHRSLLS SGSYGGGYWE RDVRRSAAPR
101: RPDGLSVLVT GAAGFVGTHC SLALKRRGDG VVGLDNFNAY YDPALKRSRQ ALLSSHGVLV LEADINDGTL LAKLFDVVPF SHVLHLAAQA GVRYATRNPQ
201: SYPAVVWASS SSVYGLNTEA PFSEIHRTDR PASLYAATKK AGEAIAHTYN HIYGLSITGL RFFTVYGPWG RPDMAYFSFT KSILSGKPIT LFRMPDGTAV
301: QRDFTYIDDV VKGCLGALNT AKKSTGVPGG GKKRGPAQLR VYNLGNTSPV PVAEMVSILE HLIGKKAKKN VVTLPQNGDV PFTHANVSLA KTDFGYRPTT
401: DLATGLRKFV KWYVEYYGVQ TPKVVNKDAG EEDKEEEGAA ASA
101: RPDGLSVLVT GAAGFVGTHC SLALKRRGDG VVGLDNFNAY YDPALKRSRQ ALLSSHGVLV LEADINDGTL LAKLFDVVPF SHVLHLAAQA GVRYATRNPQ
201: SYPAVVWASS SSVYGLNTEA PFSEIHRTDR PASLYAATKK AGEAIAHTYN HIYGLSITGL RFFTVYGPWG RPDMAYFSFT KSILSGKPIT LFRMPDGTAV
301: QRDFTYIDDV VKGCLGALNT AKKSTGVPGG GKKRGPAQLR VYNLGNTSPV PVAEMVSILE HLIGKKAKKN VVTLPQNGDV PFTHANVSLA KTDFGYRPTT
401: DLATGLRKFV KWYVEYYGVQ TPKVVNKDAG EEDKEEEGAA ASA
001: MPLSATADTS KTVKLERYNS YLRKIHSTKV LNASSKVLFR ATLLVALVLV LIFAINYPPL SDSRAAAAHH LHRRSFLSTG LFSSSSSSSS IGGAAWEKRV
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
101: RQSSTAKRPH GLSVLVTGAA GFVGSHCSLA LRKRGDGVLG FDNFNDYYDP SLKRARQELL EKQQVFIVEG DLNDGPLLRK LFDVVPFTHI LHLAAQAGVR
201: YAMKNPQSYI ASNIAGFVNL LEVAKAANPQ PAIVWASSSS VYGLNTENPF SEEHRTDQPA SLYAATKKAG EEIAHTYNHI YGLSLTGLRF FTVYGPWGRP
301: DMAYFFFTKD ILHGKSIDIY RTQDNQEVAR DFTYIDDIVK GCVGALDTAE KSTGSGGKKR GQAQLRVYNL GNTSPVPVGR LVSILEGLLG TKAKKHLIKM
401: PRNGDVPYTH ANVSLAYKDF GYKPTTDLAA GLRKFVKWYV GYYGIQPRVK KETSHAEDSA
Arabidopsis Description
GAE6UDP-glucuronate 4-epimerase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIS3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.