CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	90.6	91.26
TraesCS2B01G482000.1	Wheat	golgi	90.36	91.02
TraesCS2A01G460400.1	Wheat	unclear	90.36	91.02
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	90.12	90.78
Os04t0618200-02	Rice	golgi	84.82	90.03
Solyc07g043550.2.1	Tomato	cytosol, unclear	59.28	81.46
EER95001	Sorghum	mitochondrion	79.76	81.33
GSMUA_Achr8P33320_001	Banana	mitochondrion	80.48	80.1
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	96.87	79.6
KRH36892	Soybean	golgi, mitochondrion	79.28	79.28
CDY71965	Canola	cytosol, mitochondrion	45.06	78.57
KRH11871	Soybean	golgi, plastid	78.55	78.55
PGSC0003DMT400080637	Potato	golgi	75.66	78.5
AT2G34850.2	Thale cress	cytosol	44.1	77.54
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	77.83	77.46
Bra032409.1-P	Field mustard	mitochondrion	78.07	77.33
Solyc02g030230.2.1	Tomato	mitochondrion	77.35	77.16
CDY09555	Canola	mitochondrion	78.07	77.14
CDY02312	Canola	mitochondrion	78.07	77.14
AT4G20460.1	Thale cress	golgi, mitochondrion	76.14	76.89
CDX82768	Canola	mitochondrion	75.9	76.64
PGSC0003DMT400054459	Potato	mitochondrion	76.87	76.5
CDX78998	Canola	mitochondrion	75.66	76.4
AT1G30620.4	Thale cress	golgi, mitochondrion	77.11	76.37
KRH59194	Soybean	golgi, mitochondrion	76.14	75.96
KRH43065	Soybean	golgi, mitochondrion, plastid	76.14	75.96
PGSC0003DMT400041159	Potato	golgi, mitochondrion	70.84	75.77
CDY29113	Canola	golgi	74.94	75.49
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	82.65	75.38
Bra027557.1-P	Field mustard	golgi	74.7	75.24
Solyc12g006410.1.1	Tomato	unclear	72.29	75.19
CDY13102	Canola	golgi	74.46	75.0
Bra033746.1-P	Field mustard	golgi	74.22	74.76
CDY49015	Canola	golgi	73.98	74.51
Bra020917.1-P	Field mustard	golgi, mitochondrion	73.73	74.45
CDY52524	Canola	golgi	75.9	74.29
CDY49498	Canola	golgi	73.73	74.27
CDY31644	Canola	golgi	75.18	73.58
EER95854	Sorghum	mitochondrion, plastid	75.42	72.79
AT5G44480.1	Thale cress	mitochondrion	74.7	71.1
Bra005387.1-P	Field mustard	golgi, mitochondrion	75.42	68.94
Bra013466.1-P	Field mustard	mitochondrion	73.98	66.31
EER94859	Sorghum	extracellular, golgi	35.42	41.41
KXG36042	Sorghum	cytosol	35.42	40.38
EER98731	Sorghum	plastid	33.98	38.52
EES14924	Sorghum	endoplasmic reticulum, golgi, plastid	36.14	35.46
EES05940	Sorghum	endoplasmic reticulum, golgi, plastid	22.17	20.96
OQU75981	Sorghum	endoplasmic reticulum	20.96	19.77
EER99141	Sorghum	cytosol, endoplasmic reticulum, golgi, plastid	21.93	18.42
EES14210	Sorghum	cytosol, extracellular, golgi, plastid	21.2	18.37
EER95171	Sorghum	plastid	20.96	18.12
EER95086	Sorghum	cytosol, mitochondrion, plastid	20.72	12.8
EER95078	Sorghum	cytosol, mitochondrion, peroxisome	20.48	12.65
KXG21627	Sorghum	mitochondrion	19.52	11.81
EES07456	Sorghum	cytosol, peroxisome, plastid	2.65	3.58

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	UniProt:A0A1B6PN90
GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005975	GO:GO:0006012	GO:GO:0008150
GO:GO:0008152	GO:GO:0016853	EnsemblPlants:KXG27129	ProteinID:KXG27129	ProteinID:KXG27129.1	ProteinID:KXG27130.1
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ProteinID:OQU82337.1	PFAM:PF16363	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14
MetaCyc:PWY-3821	MetaCyc:PWY-6317	MetaCyc:PWY-6397	MetaCyc:PWY-6527	MetaCyc:PWY-7328	MetaCyc:PWY-7344
EnsemblPlantsGene:SORBI_3006G217300	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	InterPro:UDP_G4E	UniParc:UPI0001C8058E	:

Description

hypothetical protein

Coordinates

chr6:+:56497756..56501922

Molecular Weight (calculated)

45343.2 Da

IEP (calculated)

9.248

GRAVY (calculated)

-0.229

Length

415 amino acids

Sequence
(BLAST)

001: MPTTPRSRSQ ARTTRPWILS GMDFADSRRK PNFTGKIAVA AALTVMCIIV LKQSPSFSGT SVFSRRETGV THVLVTGGAG YIGSHATLRL LSDNYRVTIV
101: DNLSRGNMGA VRVLQRLFPE PGRLQFIYAD LGDAKAVNKI FSENAFDAVM HFAAVAYVGE STMEPLRYYH NITSNTLTVL EAMAAHNVNT LIYSSTCATY
201: GEPDTMPIVE TTPQNPINPY GKAKKMAEDI ILDFTKSKKQ SNMAVMILRY FNVIGSDPEG RLGEAPRPEL REHGRISGAC FDAALGIIPG LKVRGTDYPT
301: ADGTCIRDYI DVTDLVDAHV KALGKAEPGK VGIYNVGTGQ GRSVNEFVKA CMKATGASIK VEYLARRPGD YAEVYSDPSK IYKDLNWTAQ YTDLGQSLAQ
401: AWKWQKAHPN GYGSA

Best Arabidopsis Sequence Match ( AT1G30620.2 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.