CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78998	Canola	mitochondrion	99.76	99.76
AT4G20460.1	Thale cress	golgi, mitochondrion	97.32	97.32
CDY71965	Canola	cytosol, mitochondrion	56.2	97.06
Bra013466.1-P	Field mustard	mitochondrion	97.08	86.18
CDY49015	Canola	golgi	85.4	85.19
CDY49498	Canola	golgi	84.91	84.71
CDY29113	Canola	golgi	84.91	84.71
CDY13102	Canola	golgi	84.18	83.98
CDY02312	Canola	mitochondrion	81.75	80.0
CDY09555	Canola	mitochondrion	81.51	79.76
KRH43065	Soybean	golgi, mitochondrion, plastid	80.54	79.57
KRH36892	Soybean	golgi, mitochondrion	80.05	79.28
PGSC0003DMT400080637	Potato	golgi	77.13	79.25
Os04t0618200-02	Rice	golgi	75.18	79.03
KRH59194	Soybean	golgi, mitochondrion	79.56	78.61
KRH11871	Soybean	golgi, plastid	79.32	78.55
CDY52524	Canola	golgi	81.02	78.54
Solyc02g030230.2.1	Tomato	mitochondrion	79.32	78.37
CDY31644	Canola	golgi	80.05	77.59
Solyc02g069580.2.1	Tomato	golgi, mitochondrion	78.35	77.22
GSMUA_Achr3P23390_001	Banana	mitochondrion	78.35	77.22
GSMUA_Achr11P...	Banana	cytosol, golgi	73.24	76.98
GSMUA_Achr11P...	Banana	mitochondrion	77.86	76.74
Os08t0129700-01	Rice	mitochondrion	75.67	76.6
PGSC0003DMT400054459	Potato	mitochondrion	77.62	76.5
GSMUA_Achr8P33320_001	Banana	mitochondrion	77.37	76.26
EER95001	Sorghum	mitochondrion	75.43	76.17
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	74.94	76.05
HORVU7Hr1G074300.2	Barley	golgi	74.94	76.05
HORVU2Hr1G104110.1	Barley	mitochondrion, plastid	76.16	75.97
TraesCS2A01G460400.1	Wheat	unclear	76.16	75.97
KXG27129	Sorghum	mitochondrion, plastid	76.64	75.9
HORVU5Hr1G077110.3	Barley	mitochondrion	77.62	75.77
TraesCS2B01G482000.1	Wheat	golgi	75.91	75.73
TraesCS7A01G311100.1	Wheat	golgi	74.45	75.56
TraesCS5A01G291300.1	Wheat	golgi	77.37	75.53
Os07t0139400-01	Rice	plasma membrane	77.37	75.53
TraesCS2D01G460600.1	Wheat	mitochondrion, plastid	75.67	75.49
TraesCS5B01G290300.1	Wheat	mitochondrion	77.13	75.3
TraesCS5D01G298700.1	Wheat	mitochondrion	77.13	75.3
GSMUA_Achr4P31860_001	Banana	mitochondrion	75.67	74.76
TraesCS7B01G210700.2	Wheat	golgi	74.94	74.58
EER95854	Sorghum	mitochondrion, plastid	76.89	73.49
CDY47611	Canola	golgi	35.52	41.95
CDY47846	Canola	golgi	34.79	41.69
CDY03506	Canola	cytosol, golgi	35.28	41.67
CDY08378	Canola	golgi	34.79	41.45
CDX86828	Canola	golgi	34.55	40.92
CDY50431	Canola	cytosol	34.55	40.8
CDY40862	Canola	cytosol, golgi	34.31	40.63
CDY69000	Canola	cytosol	31.63	38.81
CDY21065	Canola	cytosol	32.6	38.18
CDY31278	Canola	cytosol	32.6	38.18
CDY47346	Canola	cytosol	32.12	37.61
CDY49193	Canola	cytosol	32.12	37.61
Zm00001d017999_P002	Maize	mitochondrion	28.22	37.3
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	31.39	37.28
CDY49495	Canola	cytosol	6.81	28.57
CDY60264	Canola	plastid	34.31	23.08
CDX97356	Canola	cytosol, endoplasmic reticulum, golgi	23.36	22.38
CDX94504	Canola	cytosol, endoplasmic reticulum, peroxisome	23.11	21.84
CDY04398	Canola	cytosol, endoplasmic reticulum, golgi	22.63	21.68
CDX86716	Canola	cytosol, endoplasmic reticulum, peroxisome	22.87	21.66
CDX72242	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.65	20.7
CDY39205	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.65	20.7
CDY70926	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.41	20.51
CDY28188	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.41	20.51
CDY63064	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.41	20.47
CDX95646	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.17	20.0
CDY67756	Canola	cytosol, endoplasmic reticulum, golgi, plastid	21.17	20.0
CDX92990	Canola	endoplasmic reticulum	22.14	19.96
CDX77481	Canola	endoplasmic reticulum	21.9	19.87
CDY64583	Canola	endoplasmic reticulum	22.14	19.78
CDY18087	Canola	cytosol, endoplasmic reticulum, golgi	22.14	19.78
CDY53207	Canola	endoplasmic reticulum	21.9	19.78
CDX85133	Canola	endoplasmic reticulum	21.9	19.74
CDY25850	Canola	cytosol, mitochondrion, peroxisome	19.71	18.93
CDY35137	Canola	cytosol, mitochondrion, plastid	21.65	13.28
CDY40003	Canola	cytosol, mitochondrion, plastid	21.65	13.28
CDY24092	Canola	cytosol, mitochondrion, peroxisome	21.41	13.23
CDY45116	Canola	cytosol, mitochondrion, peroxisome	21.41	13.23
CDY60210	Canola	cytosol, mitochondrion, peroxisome	21.41	13.17
CDX88455	Canola	cytosol, peroxisome, plastid	22.38	13.01
CDX98494	Canola	cytosol, mitochondrion, plastid	20.19	12.85
CDX97601	Canola	cytosol, mitochondrion, plastid	20.19	12.85
CDY20084	Canola	cytosol, mitochondrion, peroxisome	19.71	12.58
CDY32340	Canola	cytosol, mitochondrion, peroxisome	19.46	12.44
CDX81794	Canola	plastid	6.57	7.78
CDY71423	Canola	cytosol, nucleus	6.08	5.8
CDX98052	Canola	cytosol	3.89	4.95
CDY57072	Canola	cytosol, extracellular, peroxisome	3.41	4.33
CDY45471	Canola	cytosol	2.92	4.04
CDY45969	Canola	cytosol	2.92	4.04
CDY72469	Canola	cytosol	1.22	3.79

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10	GO:A0A078D698
EnsemblPlants:CDX82768	ProteinID:CDX82768	ProteinID:CDX82768.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978
GO:GO:0005975	GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00138086001	InterPro:NAD(P)-bd_dom
InterPro:NAD(P)-bd_dom_sf	PFAM:PF16363	PANTHER:PTHR43349	PANTHER:PTHR43349:SF14	MetaCyc:PWY-3821	MetaCyc:PWY-6317
MetaCyc:PWY-6397	MetaCyc:PWY-6527	MetaCyc:PWY-7328	MetaCyc:PWY-7344	SUPFAM:SSF51735	TIGRFAMs:TIGR01179
TMHMM:TMhelix	InterPro:UDP_G4E	UniPathway:UPA00214	UniParc:UPI0004EF4258	:	:

Description

BnaC01g12180D

Coordinates

chrLK031830:-:62785..65545

Molecular Weight (calculated)

45164.5 Da

IEP (calculated)

9.468

GRAVY (calculated)

-0.200

Length

411 amino acids

Sequence
(BLAST)

001: MLSFSRARSQ GRNTRPLTGG MDYLEPKRKT NVMGRVILVV SLTALCIIML KHAPSFTSPT AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVEKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPEKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPKNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARFTNL QQSLEVAWKW
401: QKTHPHGYAS S

Best Arabidopsis Sequence Match ( AT4G20460.1 )
(BLAST)

001: MLSFSRARSQ GRNTRPLGGG MEYLEPKRKS NVMGKIILVV SLTALCIFML KHAPSFTSPT AFSRSEEGVT HVLVTGGAGY IGSHAALRLL KDSYRVTIVD
101: NLSRGNLGAV KVLQGLFPEP GRLQFIYADL GDAKAVDKIF SENAFDAVMH FAAVAYVGES TLDPLKYYHN ITSNTLVVLE AVARHKVKKL IYSSTCATYG
201: EPDKMPIVEV TPQVPINPYG KAKKMAEDMI LDFSKNSDMA VMILRYFNVI GSDPEGRLGE APKPELREHG RISGACFDAA RGVIPGLQVK GTDYKTGDGT
301: CVRDYIDVTD LVDAHVKALE KAKPRNVGIY NVGTGKGRSV KEFVEACKKA TGVDIKVDFL PRRPGDYAEV YSDPAKILRD LNWSARYTNL QESLEVAWKW
401: QKTHPHGYAS S

Arabidopsis Description

Probable UDP-arabinose 4-epimerase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUN3]
SUBAcon: [mitochondrion,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.