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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, peroxisome, mitochondrion

Predictor Summary:
  • plastid 1
  • cytosol 1
  • mitochondrion 2
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, peroxisome
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:peroxisome
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038127.1-P Field mustard cytosol, mitochondrion, peroxisome 99.7 99.7
CDY25850 Canola cytosol, mitochondrion, peroxisome 63.62 99.3
CDY45116 Canola cytosol, mitochondrion, peroxisome 97.01 97.44
CDY24092 Canola cytosol, mitochondrion, peroxisome 96.56 96.99
AT1G53500.1 Thale cress cytosol, extracellular, peroxisome 94.16 94.3
CDX98494 Canola cytosol, mitochondrion, plastid 89.22 92.26
CDX97601 Canola cytosol, mitochondrion, plastid 89.07 92.11
CDY32340 Canola cytosol, mitochondrion, peroxisome 88.02 91.45
CDY20084 Canola cytosol, mitochondrion, peroxisome 88.02 91.3
GSMUA_Achr4P10430_001 Banana cytosol, extracellular, mitochondrion 83.38 85.82
CDY40003 Canola cytosol, mitochondrion, plastid 84.88 84.63
CDY35137 Canola cytosol, mitochondrion, plastid 84.88 84.63
CDY71423 Canola cytosol, nucleus 54.04 83.76
GSMUA_Achr3P31810_001 Banana cytosol, mitochondrion, peroxisome 76.65 82.45
GSMUA_Achr10P... Banana cytosol, mitochondrion, plastid 78.44 82.39
CDX88455 Canola cytosol, peroxisome, plastid 86.98 82.18
Zm00001d047796_P003 Maize extracellular, nucleus, plasma membrane 82.48 81.99
Os03t0278200-01 Rice nucleus, plasma membrane 82.63 81.78
TraesCS4A01G099200.1 Wheat cytosol 82.63 81.78
EER95086 Sorghum cytosol, mitochondrion, plastid 82.04 81.55
EER95078 Sorghum cytosol, mitochondrion, peroxisome 81.74 81.25
TraesCS4D01G206000.1 Wheat mitochondrion 82.63 80.94
TraesCS4B01G205100.3 Wheat mitochondrion 82.48 80.79
Zm00001d028654_P002 Maize cytosol 80.84 80.36
CDY45969 Canola cytosol 34.88 78.45
CDY45471 Canola cytosol 34.58 77.78
VIT_04s0069g00830.t01 Wine grape cytosol, mitochondrion, plastid 76.2 77.47
PGSC0003DMT400075973 Potato cytosol, mitochondrion, peroxisome 75.15 76.76
HORVU4Hr1G059120.2 Barley plastid 82.48 76.21
Solyc08g069110.2.1 Tomato unclear 74.25 76.19
GSMUA_Achr3P31820_001 Banana cytosol, mitochondrion, plastid 68.41 75.54
KRH04933 Soybean cytosol, mitochondrion, plastid 71.71 74.38
KRH16155 Soybean cytosol 72.9 74.35
CDY57072 Canola cytosol, extracellular, peroxisome 35.03 72.45
CDX98052 Canola cytosol 35.03 72.45
CDX81794 Canola plastid 34.58 66.57
CDY72469 Canola cytosol 11.98 60.61
CDY47846 Canola golgi 13.17 25.66
CDY08378 Canola golgi 13.02 25.22
CDY71965 Canola cytosol, mitochondrion 8.98 25.21
CDY31278 Canola cytosol 12.87 24.5
CDY21065 Canola cytosol 12.87 24.5
CDY50431 Canola cytosol 12.72 24.43
CDY47611 Canola golgi 12.57 24.14
CDY03506 Canola cytosol, golgi 12.57 24.14
CDY69000 Canola cytosol 11.98 23.88
CDY47346 Canola cytosol 12.43 23.65
CDY49193 Canola cytosol 12.43 23.65
CDY40862 Canola cytosol, golgi 12.28 23.63
CDX86828 Canola golgi 12.28 23.63
CDX86716 Canola cytosol, endoplasmic reticulum, peroxisome 14.22 21.89
CDX94504 Canola cytosol, endoplasmic reticulum, peroxisome 14.22 21.84
CDY04398 Canola cytosol, endoplasmic reticulum, golgi 13.92 21.68
CDX97356 Canola cytosol, endoplasmic reticulum, golgi 13.92 21.68
CDX78998 Canola mitochondrion 13.32 21.65
CDX82768 Canola mitochondrion 13.17 21.41
CDY63064 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.77 21.4
CDY67756 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.77 21.15
CDX95646 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.62 20.92
CDX77481 Canola endoplasmic reticulum 14.07 20.75
CDY02312 Canola mitochondrion 13.02 20.71
CDY09555 Canola mitochondrion 13.02 20.71
CDY39205 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.32 20.7
CDX72242 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.32 20.7
CDY49498 Canola golgi 12.72 20.63
CDY49015 Canola golgi 12.72 20.63
CDY29113 Canola golgi 12.72 20.63
CDY13102 Canola golgi 12.72 20.63
CDX85133 Canola endoplasmic reticulum 14.07 20.61
CDX92990 Canola endoplasmic reticulum 14.07 20.61
CDY70926 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.17 20.51
CDY28188 Canola cytosol, endoplasmic reticulum, golgi, plastid 13.17 20.51
CDY53207 Canola endoplasmic reticulum 13.92 20.44
CDY52524 Canola golgi 12.87 20.28
CDY31644 Canola golgi 12.87 20.28
CDY18087 Canola cytosol, endoplasmic reticulum, golgi 13.92 20.22
CDY64583 Canola endoplasmic reticulum 13.92 20.22
CDY60264 Canola plastid 13.02 14.24
CDY49495 Canola cytosol 1.95 13.27
Protein Annotations
KEGG:00521+4.2.1.46KEGG:00523+4.2.1.46KEGG:00525+4.2.1.46MapMan:3.13.6.1Gene3D:3.40.50.720Gene3D:3.90.25.10
GO:A0A078J8R1UniProt:A0A078J8R1EnsemblPlants:CDY60210ProteinID:CDY60210ProteinID:CDY60210.1GO:GO:0003674
GO:GO:0003824GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0008460GO:GO:0009225
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00028297001InterPro:NAD(P)-bd_domInterPro:NAD(P)-bd_dom_sfPFAM:PF04321PFAM:PF16363
PANTHER:PTHR43000PANTHER:PTHR43000:SF8MetaCyc:PWY-3221MetaCyc:PWY-6808MetaCyc:PWY-6942MetaCyc:PWY-6953
MetaCyc:PWY-6973MetaCyc:PWY-6974MetaCyc:PWY-6976MetaCyc:PWY-7104MetaCyc:PWY-7301MetaCyc:PWY-7312
MetaCyc:PWY-7315MetaCyc:PWY-7316MetaCyc:PWY-7318MetaCyc:PWY-7413MetaCyc:PWY-7414MetaCyc:PWY-7440
MetaCyc:PWY-7657MetaCyc:PWY-7688InterPro:RmlD-like-bdSUPFAM:SSF51735TIGRFAMs:TIGR01181UniParc:UPI0004EEBB3E
InterPro:dTDP_Gluc_deHydtase:::::
Description
BnaCnng35880DBnaCnng35880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8R1]
Coordinates
chrLK033854:-:34417..36835
Molecular Weight (calculated)
75005.7 Da
IEP (calculated)
7.206
GRAVY (calculated)
-0.365
Length
668 amino acids
Sequence
(BLAST)
001: MATTYKPKNI LITGAAGFIA SHVANRLIRS YPDYKIVVLD KLDYCSDLKN LNPSHSSPNF KFVKGDIASD DLVSYLLITE NIDTIMHFAA QTHVDNSFGN
101: SFEFTKNNIY GTHVLLEACK VTGQIRRFIH VSTDEVYGET DEDAAVGNHE ASQLLPTNPY SATKAGAEML VMAYGRSYGL PVITTRGNNV YGPNQFPEKM
201: IPKFMLLAMS GKPLPIHGDG SNVRSYLYCE DVAEAFEVVL HKGEVGHVYN IGTKRERRVI DVARDICKLL GKDPESSIQF VENRPFNDQR YFLDDQKLKN
301: LGWSERTRWE DGLKKTMEWY TQNPEWWGDV SGALLPHPRM LMMPGGRLSD VSDEKKDASS NTVQTFTVVT PNNKTAGSND KASLKFLIYG KTGWIGGLLG
401: KLCEKQGITY EYGKGRLEDR ASLIADIRSI KPTHVFNAAG LTGRPNVDWC ESHKAETIRV NVAGTLTLAD VCRESGLLMM NFATGCIFEY DAAHPEGSGL
501: GFKEEDKPNF TGSFYSKTKA MVEELLREFD NVCTLRVRMP ISSDLNNPRN FITKISRYNK VVNIPNSMTI LDELLPISIE MAKRNLRGIW NFTNPGVVSH
601: NEILEMYKSY IEPGFKWSNF TVEEQAKVIV APRSNNEMDG AKLSKEFPEM LPIKEALIKY VFGPNKRT
Best Arabidopsis Sequence Match ( AT1G53500.1 )
(BLAST)
001: MDDTTYKPKN ILITGAAGFI ASHVANRLIR NYPDYKIVVL DKLDYCSDLK NLDPSFSSPN FKFVKGDIAS DDLVNYLLIT ENIDTIMHFA AQTHVDNSFG
101: NSFEFTKNNI YGTHVLLEAC KVTGQIRRFI HVSTDEVYGE TDEDAAVGNH EASQLLPTNP YSATKAGAEM LVMAYGRSYG LPVITTRGNN VYGPNQFPEK
201: MIPKFILLAM SGKPLPIHGD GSNVRSYLYC EDVAEAFEVV LHKGEIGHVY NVGTKRERRV IDVARDICKL FGKDPESSIQ FVENRPFNDQ RYFLDDQKLK
301: KLGWQERTNW EDGLKKTMDW YTQNPEWWGD VSGALLPHPR MLMMPGGRLS DGSSEKKDVS SNTVQTFTVV TPKNGDSGDK ASLKFLIYGK TGWLGGLLGK
401: LCEKQGITYE YGKGRLEDRA SLVADIRSIK PTHVFNAAGL TGRPNVDWCE SHKPETIRVN VAGTLTLADV CRENDLLMMN FATGCIFEYD ATHPEGSGIG
501: FKEEDKPNFF GSFYSKTKAM VEELLREFDN VCTLRVRMPI SSDLNNPRNF ITKISRYNKV VDIPNSMTVL DELLPISIEM AKRNLRGIWN FTNPGVVSHN
601: EILEMYKNYI EPGFKWSNFT VEEQAKVIVA ARSNNEMDGS KLSKEFPEML SIKESLLKYV FEPNKRT
Arabidopsis Description
RHM2RHM2 [Source:UniProtKB/TrEMBL;Acc:A0A178W591]
SUBAcon: [extracellular,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.