Factsheet for Zm00001d028825_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

plastid 1
golgi 2
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047683_P003	Maize	mitochondrion	94.55	94.1
EER95001	Sorghum	mitochondrion	90.05	93.37
Os08t0129700-01	Rice	mitochondrion	84.6	87.93
TraesCS7D01G307500.1	Wheat	golgi, mitochondrion	82.46	85.93
HORVU7Hr1G074300.2	Barley	golgi	82.23	85.68
TraesCS7A01G311100.1	Wheat	golgi	81.52	84.94
TraesCS7B01G210700.2	Wheat	golgi	82.23	84.02
GSMUA_Achr11P...	Banana	mitochondrion	75.59	76.5
GSMUA_Achr3P23390_001	Banana	mitochondrion	75.59	76.5
Zm00001d002292_P004	Maize	endoplasmic reticulum, golgi	66.59	61.76
Zm00001d026311_P001	Maize	golgi, mitochondrion, plastid	73.7	61.58
Zm00001d029151_P002	Maize	extracellular, golgi	33.41	39.72
Zm00001d021249_P003	Maize	cytosol	33.41	38.84
Zm00001d010657_P001	Maize	golgi, plastid, vacuole	31.28	38.15
Zm00001d014509_P001	Maize	cytosol	25.83	37.98
Zm00001d017999_P002	Maize	mitochondrion	27.73	37.62
Zm00001d005598_P001	Maize	plastid	32.46	37.53
Zm00001d032346_P002	Maize	endoplasmic reticulum, golgi, plastid	35.07	34.99
Zm00001d020093_P002	Maize	golgi	24.41	34.11
Zm00001d018350_P001	Maize	plasma membrane	22.04	21.18
Zm00001d037087_P001	Maize	endoplasmic reticulum	20.62	19.77
Zm00001d045078_P001	Maize	extracellular, golgi	18.96	19.37
Zm00001d031577_P001	Maize	cytosol, endoplasmic reticulum, peroxisome, plastid	19.91	18.67
Zm00001d049804_P001	Maize	plasma membrane	19.43	18.3
Zm00001d028427_P001	Maize	plastid	20.14	17.75
Zm00001d047915_P001	Maize	plastid	20.14	17.75
Zm00001d021026_P001	Maize	endoplasmic reticulum	20.38	17.66
Zm00001d034293_P001	Maize	plastid	7.11	13.57
Zm00001d028654_P002	Maize	cytosol	19.91	12.5
Zm00001d047796_P003	Maize	extracellular, nucleus, plasma membrane	19.91	12.5
Zm00001d037784_P002	Maize	endoplasmic reticulum	19.43	11.78
Zm00001d037310_P001	Maize	plastid	7.35	10.2
Zm00001d017794_P001	Maize	plastid	7.82	8.85
Zm00001d038116_P001	Maize	plastid	6.64	8.64
Zm00001d017601_P001	Maize	extracellular, peroxisome	3.08	4.23

Protein Annotations

KEGG:00052+5.1.3.2	KEGG:00520+5.1.3.2	EntrezGene:100304323	MapMan:3.13.7.1	Gene3D:3.40.50.720	Gene3D:3.90.25.10
UniProt:A0A1D6K005	GO:GO:0003674	GO:GO:0003824	GO:GO:0003978	GO:GO:0005575	GO:GO:0005975
GO:GO:0006012	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016853
InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONL97151.1	ProteinID:ONL97154.1	PFAM:PF16363	PANTHER:PTHR43349
PANTHER:PTHR43349:SF14	SUPFAM:SSF51735	TIGRFAMs:TIGR01179	TMHMM:TMhelix	InterPro:UDP_G4E	UniParc:UPI0008444966
EnsemblPlantsGene:Zm00001d028825	EnsemblPlants:Zm00001d028825_P001	EnsemblPlants:Zm00001d028825_T001	SEG:seg	:	:

Description

NAD(P)-binding Rossmann-fold superfamily protein

Coordinates

chr1:+:47748642..47754005

Molecular Weight (calculated)

46664.4 Da

IEP (calculated)

9.407

GRAVY (calculated)

-0.137

Length

422 amino acids

Sequence
(BLAST)

001: MIPLNRRTSL PRAGMDYFDA RRKPHNVGKI IAALVLTTLC IFVLKQSPGF GGNSVFSRHE HGVTHVLVTG GAGYIGSHAA LRLLKDNYRV TIVDNLSRGN
101: MGAVKVLQGL FPQPGRLQFI FADLGNQKSV SSFMLLKLLC LCLFCLWRVT SKVFFSLNWL PAVAYVGEST LEPLRYYHNI TSNTLLILEA MASHGVQTLI
201: YSSTCATYGE PDKMPITEAT PQFPINPYGK AKKMAEDIII DFSNSKGADM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ALGVIPGLKV
301: KGTDYPTADG TCIRDYIDVT DLVDAHVKAL NKAEPRKVGI YNVGTGRGRS VNEFVDACKK ATGVNIKIEY LNRRPGDYAE VYSDPTKINK ELNWTAHYTD
401: LKESLSVAWR WQKSHPRGYG PN

Best Arabidopsis Sequence Match ( AT1G30620.1 )
(BLAST)

001: MFSFGRARSQ GRQNRSMSLG GLDYADPKKK NNYLGKILLT ASLTALCIFM LKQSPTFNTP SVFSRHEPGV THVLVTGGAG YIGSHAALRL LKESYRVTIV
101: DNLSRGNLAA VRILQELFPE PGRLQFIYAD LGDAKAVNKI FTENAFDAVM HFAAVAYVGE STQFPLKYYH NITSNTLVVL ETMAAHGVKT LIYSSTCATY
201: GEPDIMPITE ETPQVPINPY GKAKKMAEDI ILDFSKNSDM AVMILRYFNV IGSDPEGRLG EAPRPELREH GRISGACFDA ARGIMPGLQI KGTDYKTADG
301: TCVRDYIDVT DLVDAHVKAL QKAKPRKVGI YNVGTGKGSS VKEFVEACKK ATGVEIKIDY LPRRAGDYAE VYSDPSKIRK ELNWTAKHTN LKESLETAWR
401: WQKLHRNGYG LTTSSVSVY

Arabidopsis Description

MUR4UDP-arabinose 4-epimerase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA77]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.