Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G045920.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G07920.1 | HORVU5Hr1G045920.2 | AT3G54220.1 | 19228333 |
| AT1G07930.1 | HORVU5Hr1G045920.2 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G056740.1 | Barley | cytosol | 96.13 | 100.0 |
| TraesCS5B01G418100.1 | Wheat | cytosol | 96.13 | 100.0 |
| TraesCS5B01G418200.1 | Wheat | cytosol | 96.13 | 100.0 |
| TraesCS5D01G423300.1 | Wheat | cytosol | 96.13 | 100.0 |
| TraesCS5D01G423400.1 | Wheat | cytosol | 96.13 | 100.0 |
| HORVU4Hr1G056830.1 | Barley | cytosol | 62.8 | 99.66 |
| TraesCS5A01G415400.1 | Wheat | cytosol | 95.48 | 99.33 |
| TraesCS5A01G415600.1 | Wheat | cytosol | 95.48 | 99.33 |
| GSMUA_Achr5P24440_001 | Banana | cytosol | 27.1 | 99.21 |
| CDY09214 | Canola | cytosol | 33.98 | 98.75 |
| HORVU5Hr1G051280.1 | Barley | cytosol | 21.94 | 98.08 |
| HORVU5Hr1G100200.3 | Barley | mitochondrion | 96.99 | 97.2 |
| KRH07098 | Soybean | cytosol, mitochondrion, nucleus | 93.12 | 96.87 |
| KRG93959 | Soybean | nucleus | 92.9 | 96.64 |
| Os03t0177400-01 | Rice | cytosol | 92.9 | 96.64 |
| Os03t0177500-01 | Rice | cytosol | 92.9 | 96.64 |
| Os03t0177900-01 | Rice | plasma membrane | 92.9 | 96.64 |
| Os03t0178000-02 | Rice | cytosol | 92.9 | 96.64 |
| HORVU0Hr1G017020.1 | Barley | cytosol | 92.69 | 96.42 |
| HORVU2Hr1G013680.1 | Barley | cytosol, plasma membrane | 92.69 | 96.42 |
| Zm00001d046449_P003 | Maize | cytosol | 92.69 | 96.42 |
| Zm00001d037882_P001 | Maize | cytosol | 38.28 | 96.22 |
| KRH58241 | Soybean | nucleus | 92.47 | 96.2 |
| GSMUA_Achr2P19000_001 | Banana | cytosol | 15.91 | 96.1 |
| CDY06287 | Canola | cytosol | 46.88 | 96.04 |
| KXG20293 | Sorghum | cytosol | 92.26 | 95.97 |
| KXG20294 | Sorghum | cytosol | 92.26 | 95.97 |
| KXG20296 | Sorghum | cytosol | 92.26 | 95.97 |
| KXG20299 | Sorghum | cytosol | 92.26 | 95.97 |
| Zm00001d037875_P014 | Maize | cytosol | 92.9 | 95.79 |
| Zm00001d037877_P014 | Maize | cytosol | 92.9 | 95.79 |
| Zm00001d036904_P001 | Maize | cytosol | 92.04 | 95.75 |
| Zm00001d009870_P008 | Maize | cytosol | 92.69 | 95.57 |
| Zm00001d037873_P010 | Maize | cytosol | 92.69 | 95.57 |
| Zm00001d037905_P010 | Maize | cytosol | 92.69 | 95.57 |
| KRH34904 | Soybean | nucleus | 92.04 | 95.54 |
| PGSC0003DMT400020968 | Potato | cytosol | 91.83 | 95.53 |
| VIT_06s0004g03240.t01 | Wine grape | cytosol | 91.83 | 95.53 |
| Bra031601.1-P | Field mustard | cytosol | 40.65 | 95.45 |
| GSMUA_Achr10P... | Banana | cytosol | 57.85 | 95.39 |
| CDY67375 | Canola | cytosol | 56.99 | 95.32 |
| KRH04781 | Soybean | endoplasmic reticulum | 91.61 | 95.3 |
| KRH57863 | Soybean | nucleus | 91.61 | 95.3 |
| PGSC0003DMT400050663 | Potato | cytosol | 91.61 | 95.3 |
| Solyc11g069700.1.1 | Tomato | nucleus | 91.61 | 95.3 |
| Zm00001d009868_P015 | Maize | cytosol | 92.26 | 95.12 |
| PGSC0003DMT400053547 | Potato | cytosol | 91.61 | 95.09 |
| PGSC0003DMT400053553 | Potato | cytosol | 91.61 | 95.09 |
| PGSC0003DMT400059830 | Potato | cytosol | 91.61 | 95.09 |
| PGSC0003DMT400059832 | Potato | cytosol | 91.61 | 95.09 |
| Solyc06g005060.2.1 | Tomato | cytosol | 91.61 | 95.09 |
| Solyc06g009970.2.1 | Tomato | extracellular, nucleus, plastid | 91.61 | 95.09 |
| GSMUA_Achr10P... | Banana | cytosol | 56.99 | 94.98 |
| VIT_08s0040g02330.t01 | Wine grape | cytosol | 91.18 | 94.85 |
| AT1G07920.1 | Thale cress | cytosol | 91.4 | 94.65 |
| AT1G07930.1 | Thale cress | cytosol | 91.4 | 94.65 |
| AT1G07940.3 | Thale cress | cytosol | 91.4 | 94.65 |
| AT5G60390.2 | Thale cress | cytosol | 91.4 | 94.65 |
| CDY06289 | Canola | cytosol | 52.04 | 94.53 |
| Solyc06g009960.1.1 | Tomato | cytosol | 83.23 | 94.39 |
| HORVU4Hr1G056820.1 | Barley | plasma membrane | 96.34 | 94.12 |
| Bra002483.1-P | Field mustard | cytosol | 90.75 | 93.99 |
| Bra018669.1-P | Field mustard | cytosol | 90.75 | 93.99 |
| Bra031602.1-P | Field mustard | cytosol | 90.75 | 93.99 |
| CDX88757 | Canola | cytosol | 80.86 | 93.77 |
| Bra018242.1-P | Field mustard | cytosol | 90.54 | 93.76 |
| Bra020253.1-P | Field mustard | cytosol | 90.54 | 93.76 |
| CDY09211 | Canola | cytosol | 86.24 | 93.69 |
| CDY10804 | Canola | cytosol | 86.24 | 93.69 |
| CDY34479 | Canola | cytosol | 86.24 | 93.69 |
| CDY61938 | Canola | cytosol | 86.24 | 93.69 |
| HORVU6Hr1G085320.3 | Barley | cytosol | 88.82 | 93.65 |
| OQU75582 | Sorghum | cytosol | 25.16 | 93.6 |
| Bra031605.1-P | Field mustard | cytosol | 85.81 | 93.44 |
| CDY22710 | Canola | cytosol | 85.81 | 93.44 |
| CDY22711 | Canola | cytosol | 85.81 | 93.44 |
| VIT_13s0019g03920.t01 | Wine grape | cytosol | 91.4 | 93.41 |
| Bra006661.1-P | Field mustard | cytosol | 89.89 | 93.1 |
| Bra020251.1-P | Field mustard | cytosol | 82.37 | 92.96 |
| GSMUA_Achr6P04090_001 | Banana | cytosol | 39.14 | 92.39 |
| HORVU6Hr1G085370.1 | Barley | cytosol | 88.17 | 90.71 |
| Zm00001d009887_P001 | Maize | cytosol | 28.17 | 89.73 |
| GSMUA_Achr3P17840_001 | Banana | cytosol | 29.03 | 88.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 39.57 | 88.04 |
| CDX93604 | Canola | cytosol | 86.67 | 87.61 |
| CDX95108 | Canola | cytosol, extracellular | 90.75 | 86.65 |
| CDX70032 | Canola | cytosol | 64.09 | 86.63 |
| OQU75597 | Sorghum | cytosol | 32.47 | 86.29 |
| CDY06288 | Canola | cytosol | 21.29 | 86.09 |
| CDY06290 | Canola | cytosol | 21.29 | 86.09 |
| CDY67376 | Canola | cytosol | 21.29 | 86.09 |
| CDY69678 | Canola | cytosol | 21.29 | 86.09 |
| GSMUA_Achr7P15510_001 | Banana | cytosol, plasma membrane | 75.48 | 86.03 |
| VIT_06s0004g03220.t01 | Wine grape | cytosol | 92.04 | 82.63 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 37.85 | 81.86 |
| VIT_19s0014g04110.t01 | Wine grape | cytosol | 21.08 | 80.99 |
| Bra030707.1-P | Field mustard | cytosol | 90.75 | 71.53 |
| CDY58828 | Canola | cytosol | 85.81 | 70.25 |
| GSMUA_Achr6P02020_001 | Banana | mitochondrion | 51.4 | 69.08 |
| HORVU2Hr1G012860.1 | Barley | cytosol | 33.98 | 32.44 |
| HORVU3Hr1G020770.1 | Barley | cytosol | 10.32 | 30.38 |
| HORVU5Hr1G122350.1 | Barley | cytosol | 19.35 | 29.32 |
| HORVU0Hr1G026370.1 | Barley | mitochondrion | 11.18 | 23.53 |
| HORVU2Hr1G079480.2 | Barley | cytosol, plastid | 12.69 | 22.18 |
| HORVU2Hr1G040960.1 | Barley | mitochondrion | 10.97 | 21.34 |
| HORVU6Hr1G053680.5 | Barley | plastid | 23.44 | 21.21 |
| HORVU2Hr1G102800.6 | Barley | cytosol, plastid | 33.98 | 20.93 |
| HORVU2Hr1G119310.19 | Barley | cytosol | 30.75 | 20.75 |
| HORVU2Hr1G040970.1 | Barley | mitochondrion | 11.18 | 11.48 |
Protein Annotations
| MapMan:17.5.1.1 | Gene3D:2.40.30.10 | Gene3D:3.40.50.300 | UniProt:A0A287SHN6 | EMBL:AK354224 | EMBL:AK356416 |
| ncoils:Coil | InterPro:EFTu-like_2 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003746 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006412 | GO:GO:0006414 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:G_TR_CS | EnsemblPlantsGene:HORVU5Hr1G100700 | EnsemblPlants:HORVU5Hr1G100700.3 | InterPro:IPR000795 | HAMAP:MF_00118_A | InterPro:P-loop_NTPase |
| PFAM:PF00009 | PFAM:PF03143 | PFAM:PF03144 | PRINTS:PR00315 | ScanProsite:PS00301 | PFscan:PS51722 |
| PANTHER:PTHR23115 | PANTHER:PTHR23115:SF230 | SUPFAM:SSF50447 | SUPFAM:SSF50465 | SUPFAM:SSF52540 | InterPro:TF_GTP-bd_dom |
| TIGRFAMs:TIGR00483 | InterPro:Transl_B-barrel_sf | InterPro:Transl_elong_EF1A/Init_IF2_C | InterPro:Transl_elong_EF1A_euk/arc | InterPro:Transl_elong_EFTu/EF1A_C | UniParc:UPI000B46396C |
Description
Elongation factor 1-alpha [Source:UniProtKB/TrEMBL;Acc:A0A287SHN6]
Coordinates
chrchr5H:+:611821185..611824186
Molecular Weight (calculated)
51049.2 Da
IEP (calculated)
9.570
GRAVY (calculated)
-0.218
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSCVLRPA YLDLAVSAMG KEKTHINIVV IGHVDSGKST TTGHLIYKLG GIDKRVIERF EKEAAEMNKR SFKYAWVLDK LKAERERGIT IDIALWKFET
101: TKYYCTVIDA PGHRDFIKNM ITGTSQADCA VLIIDSTTGG FEAGISKDGQ TREHALLAFT LGVKQMICCC NKMDATTPKY SKARYEEIVK EVSSYLKKVG
201: YNPDKVPFVP ISGFEGDNMI ERSTNLDWYK GPTLLEALDQ INEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGVIKP GMVVTFGPTG LTTEVKSVEM
301: HHESLLEALP GDNVGFNVKN VAVKDLKRGF VASNSKDDPA KEAANFTSQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFAE LVTKIDRRSG KELEALPKFL
401: KNGDAGIVKM IPTKPMVVET FATYPPLGRF AVRDMRQTVA VGVIKGVEKK DPTGAKVTKA AIKKK
101: TKYYCTVIDA PGHRDFIKNM ITGTSQADCA VLIIDSTTGG FEAGISKDGQ TREHALLAFT LGVKQMICCC NKMDATTPKY SKARYEEIVK EVSSYLKKVG
201: YNPDKVPFVP ISGFEGDNMI ERSTNLDWYK GPTLLEALDQ INEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGVIKP GMVVTFGPTG LTTEVKSVEM
301: HHESLLEALP GDNVGFNVKN VAVKDLKRGF VASNSKDDPA KEAANFTSQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFAE LVTKIDRRSG KELEALPKFL
401: KNGDAGIVKM IPTKPMVVET FATYPPLGRF AVRDMRQTVA VGVIKGVEKK DPTGAKVTKA AIKKK
001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK
Arabidopsis Description
A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.