Factsheet for Bra002483.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Bra007056.1-P	AT3G54220.1	19228333
AT1G07930.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031602.1-P	Field mustard	cytosol	100.0	100.0
CDY61938	Canola	cytosol	95.32	100.0
Bra018669.1-P	Field mustard	cytosol	100.0	100.0
Bra020253.1-P	Field mustard	cytosol	99.78	99.78
Bra018242.1-P	Field mustard	cytosol	99.78	99.78
Bra031605.1-P	Field mustard	cytosol	94.88	99.77
Bra020251.1-P	Field mustard	cytosol	91.31	99.51
AT1G07930.1	Thale cress	cytosol	99.33	99.33
AT1G07940.3	Thale cress	cytosol	99.33	99.33
AT5G60390.2	Thale cress	cytosol	99.33	99.33
AT1G07920.1	Thale cress	cytosol	99.33	99.33
GSMUA_Achr5P24440_001	Banana	cytosol	28.06	99.21
Bra006661.1-P	Field mustard	cytosol	98.89	98.89
HORVU5Hr1G051280.1	Barley	cytosol	22.72	98.08
Bra031601.1-P	Field mustard	cytosol	42.98	97.47
KRG93959	Soybean	nucleus	96.21	96.64
KRH58241	Soybean	nucleus	96.21	96.64
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.77	96.2
Os03t0178000-02	Rice	cytosol	95.77	96.2
Os03t0177900-01	Rice	plasma membrane	95.77	96.2
Os03t0177500-01	Rice	cytosol	95.77	96.2
Os03t0177400-01	Rice	cytosol	95.77	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	16.48	96.1
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	95.77	95.98
Solyc06g005060.2.1	Tomato	cytosol	95.77	95.98
KRH34904	Soybean	nucleus	95.55	95.76
VIT_06s0004g03240.t01	Wine grape	cytosol	95.32	95.75
Zm00001d036904_P001	Maize	cytosol	95.32	95.75
KXG20293	Sorghum	cytosol	95.32	95.75
KXG20294	Sorghum	cytosol	95.32	95.75
KXG20296	Sorghum	cytosol	95.32	95.75
KXG20299	Sorghum	cytosol	95.32	95.75
PGSC0003DMT400050663	Potato	cytosol	95.32	95.75
Zm00001d037882_P001	Maize	cytosol	39.42	95.68
Solyc11g069700.1.1	Tomato	nucleus	95.1	95.53
PGSC0003DMT400053547	Potato	cytosol	95.1	95.31
PGSC0003DMT400053553	Potato	cytosol	95.1	95.31
PGSC0003DMT400059830	Potato	cytosol	95.1	95.31
PGSC0003DMT400059832	Potato	cytosol	95.1	95.31
Zm00001d046449_P003	Maize	cytosol	94.88	95.3
KRH04781	Soybean	endoplasmic reticulum	94.65	95.08
PGSC0003DMT400020968	Potato	cytosol	94.65	95.08
KRH57863	Soybean	nucleus	94.65	95.08
VIT_08s0040g02330.t01	Wine grape	cytosol	94.43	94.85
GSMUA_Achr10P...	Banana	cytosol	59.47	94.68
Solyc06g009960.1.1	Tomato	cytosol	86.41	94.63
GSMUA_Achr10P...	Banana	cytosol	58.8	94.62
Zm00001d037905_P010	Maize	cytosol	94.88	94.46
TraesCS4A01G107700.1	Wheat	cytosol	93.99	94.41
TraesCS5B01G418200.1	Wheat	cytosol	93.99	94.41
TraesCS5B01G418100.1	Wheat	cytosol	93.99	94.41
TraesCS5A01G415600.1	Wheat	cytosol	93.99	94.41
TraesCS5A01G415400.1	Wheat	cytosol	93.99	94.41
HORVU4Hr1G056740.1	Barley	cytosol	93.99	94.41
TraesCS4B01G196900.1	Wheat	golgi	93.99	94.41
TraesCS4A01G107600.1	Wheat	cytosol	93.99	94.41
Zm00001d009868_P015	Maize	cytosol	94.65	94.23
Zm00001d009870_P008	Maize	cytosol	94.65	94.23
Zm00001d037873_P010	Maize	cytosol	94.65	94.23
Zm00001d037875_P014	Maize	cytosol	94.43	94.01
Zm00001d037877_P014	Maize	cytosol	94.43	94.01
VIT_13s0019g03920.t01	Wine grape	cytosol	94.43	93.19
OQU75582	Sorghum	cytosol	25.84	92.8
HORVU4Hr1G056830.1	Barley	cytosol	59.69	91.47
HORVU5Hr1G100200.3	Barley	mitochondrion	93.99	90.95
GSMUA_Achr6P04090_001	Banana	cytosol	39.87	90.86
HORVU5Hr1G100700.3	Barley	plasma membrane	93.99	90.75
Zm00001d009887_P001	Maize	cytosol	29.18	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	30.29	89.47
HORVU6Hr1G085320.3	Barley	cytosol	87.08	88.66
HORVU4Hr1G056820.1	Barley	plasma membrane	93.54	88.24
GSMUA_AchrUn_...	Banana	cytosol	40.76	87.56
TraesCS4B01G196800.2	Wheat	golgi	93.99	87.37
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	78.4	86.27
HORVU6Hr1G085370.1	Barley	cytosol	86.41	85.84
OQU75597	Sorghum	cytosol	33.18	85.14
VIT_06s0004g03220.t01	Wine grape	cytosol	95.32	82.63
VIT_19s0014g04110.t01	Wine grape	cytosol	21.83	80.99
GSMUA_Achr10P...	Banana	cytosol, plastid	38.75	80.93
Bra030707.1-P	Field mustard	cytosol	99.55	75.76
GSMUA_Achr6P02020_001	Banana	mitochondrion	53.67	69.65
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.81	66.98
Bra013458.1-P	Field mustard	plastid	28.73	27.45
Bra038805.1-P	Field mustard	plastid	28.95	27.37
Bra036234.1-P	Field mustard	mitochondrion	27.62	27.31
Bra033753.1-P	Field mustard	plastid	28.51	27.0
Bra000853.1-P	Field mustard	mitochondrion	27.17	26.93
Bra020926.1-P	Field mustard	plastid	24.94	26.23
Bra006069.1-P	Field mustard	cytosol	34.97	24.92
Bra016571.1-P	Field mustard	cytosol	35.41	22.43
Bra028577.1-P	Field mustard	cytosol	34.74	21.37

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:AAK94429	ProteinID:AAK94429.1	EMBL:AF398148
EnsemblPlantsGene:Bra002483	EnsemblPlants:Bra002483.1	EnsemblPlants:Bra002483.1-P	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M4DQ76	HAMAP:MF_00118_A
InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301
PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI000189CF99	SEG:seg	:	:	:	:

Description

AT5G60390 (E=2e-254) | elongation factor 1-alpha / EF-1-alpha

Coordinates

chrA10:+:9276768..9278204

Molecular Weight (calculated)

49477.0 Da

IEP (calculated)

9.637

GRAVY (calculated)

-0.326

Length

449 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGML KPGMVVTFAP SGLTTEVKSV EMHHESLVEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.