Factsheet for Bra031605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	Bra007056.1-P	AT3G54220.1	19228333
AT1G07930.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22710	Canola	cytosol	100.0	100.0
CDY22711	Canola	cytosol	100.0	100.0
Bra031602.1-P	Field mustard	cytosol	99.77	94.88
Bra002483.1-P	Field mustard	cytosol	99.77	94.88
Bra018669.1-P	Field mustard	cytosol	99.77	94.88
GSMUA_Achr10P...	Banana	cytosol	62.53	94.68
Bra020253.1-P	Field mustard	cytosol	99.53	94.65
Bra018242.1-P	Field mustard	cytosol	99.53	94.65
GSMUA_Achr10P...	Banana	cytosol	61.83	94.62
AT1G07920.1	Thale cress	cytosol	99.06	94.21
AT5G60390.2	Thale cress	cytosol	99.06	94.21
AT1G07940.3	Thale cress	cytosol	99.06	94.21
AT1G07930.1	Thale cress	cytosol	99.06	94.21
Bra020251.1-P	Field mustard	cytosol	90.63	93.93
Bra006661.1-P	Field mustard	cytosol	98.59	93.76
KRG93959	Soybean	nucleus	95.78	91.5
KRH58241	Soybean	nucleus	95.78	91.5
HORVU4Hr1G056830.1	Barley	cytosol	62.76	91.47
KRH07098	Soybean	cytosol, mitochondrion, nucleus	95.32	91.05
Os03t0177400-01	Rice	cytosol	95.32	91.05
Os03t0177500-01	Rice	cytosol	95.32	91.05
Os03t0178000-02	Rice	cytosol	95.32	91.05
Os03t0177900-01	Rice	plasma membrane	95.32	91.05
GSMUA_Achr6P04090_001	Banana	cytosol	41.92	90.86
Solyc06g005060.2.1	Tomato	cytosol	95.32	90.85
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	95.32	90.85
VIT_06s0004g03240.t01	Wine grape	cytosol	95.08	90.83
KRH34904	Soybean	nucleus	95.08	90.62
PGSC0003DMT400050663	Potato	cytosol	94.85	90.6
KXG20299	Sorghum	cytosol	94.85	90.6
KXG20296	Sorghum	cytosol	94.85	90.6
KXG20294	Sorghum	cytosol	94.85	90.6
KXG20293	Sorghum	cytosol	94.85	90.6
Zm00001d036904_P001	Maize	cytosol	94.85	90.6
Solyc11g069700.1.1	Tomato	nucleus	94.61	90.38
PGSC0003DMT400059832	Potato	cytosol	94.61	90.18
PGSC0003DMT400053547	Potato	cytosol	94.61	90.18
PGSC0003DMT400053553	Potato	cytosol	94.61	90.18
PGSC0003DMT400059830	Potato	cytosol	94.61	90.18
Zm00001d046449_P003	Maize	cytosol	94.38	90.16
PGSC0003DMT400020968	Potato	cytosol	94.15	89.93
KRH04781	Soybean	endoplasmic reticulum	94.15	89.93
KRH57863	Soybean	nucleus	94.15	89.93
VIT_08s0040g02330.t01	Wine grape	cytosol	93.91	89.71
GSMUA_Achr3P17840_001	Banana	cytosol	31.85	89.47
Zm00001d037905_P010	Maize	cytosol	94.38	89.36
TraesCS4A01G107700.1	Wheat	cytosol	93.44	89.26
HORVU4Hr1G056740.1	Barley	cytosol	93.44	89.26
TraesCS4B01G196900.1	Wheat	golgi	93.44	89.26
TraesCS5A01G415400.1	Wheat	cytosol	93.44	89.26
TraesCS4A01G107600.1	Wheat	cytosol	93.44	89.26
TraesCS5B01G418200.1	Wheat	cytosol	93.44	89.26
TraesCS5A01G415600.1	Wheat	cytosol	93.44	89.26
TraesCS5B01G418100.1	Wheat	cytosol	93.44	89.26
Zm00001d037873_P010	Maize	cytosol	94.15	89.14
Zm00001d009870_P008	Maize	cytosol	94.15	89.14
Zm00001d009868_P015	Maize	cytosol	94.15	89.14
Solyc06g009960.1.1	Tomato	cytosol	85.48	89.02
Zm00001d037875_P014	Maize	cytosol	93.91	88.91
Zm00001d037877_P014	Maize	cytosol	93.91	88.91
VIT_13s0019g03920.t01	Wine grape	cytosol	93.91	88.13
GSMUA_AchrUn_...	Banana	cytosol	42.86	87.56
HORVU5Hr1G100200.3	Barley	mitochondrion	93.44	85.99
Bra031601.1-P	Field mustard	cytosol	39.81	85.86
HORVU5Hr1G100700.3	Barley	plasma membrane	93.44	85.81
GSMUA_Achr2P19000_001	Banana	cytosol	15.22	84.42
Zm00001d037882_P001	Maize	cytosol	36.3	83.78
HORVU6Hr1G085320.3	Barley	cytosol	86.18	83.45
HORVU4Hr1G056820.1	Barley	plasma membrane	92.97	83.4
TraesCS4B01G196800.2	Wheat	golgi	93.44	82.61
GSMUA_Achr5P24440_001	Banana	cytosol	24.36	81.89
HORVU6Hr1G085370.1	Barley	cytosol	85.48	80.75
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	77.05	80.64
VIT_06s0004g03220.t01	Wine grape	cytosol	95.08	78.38
HORVU5Hr1G051280.1	Barley	cytosol	18.74	76.92
Zm00001d009887_P001	Maize	cytosol	25.76	75.34
OQU75582	Sorghum	cytosol	22.01	75.2
OQU75597	Sorghum	cytosol	29.74	72.57
Bra030707.1-P	Field mustard	cytosol	99.3	71.86
GSMUA_Achr10P...	Banana	cytosol, plastid	35.36	70.23
VIT_19s0014g04110.t01	Wine grape	cytosol	18.27	64.46
GSMUA_Achr6P02020_001	Banana	mitochondrion	51.05	63.01
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	12.41	50.0
Bra013458.1-P	Field mustard	plastid	28.57	25.96
Bra038805.1-P	Field mustard	plastid	28.57	25.68
Bra036234.1-P	Field mustard	mitochondrion	27.17	25.55
Bra033753.1-P	Field mustard	plastid	28.1	25.32
Bra000853.1-P	Field mustard	mitochondrion	26.7	25.17
Bra020926.1-P	Field mustard	plastid	24.36	24.36
Bra006069.1-P	Field mustard	cytosol	34.89	23.65
Bra016571.1-P	Field mustard	cytosol	35.83	21.58
Bra028577.1-P	Field mustard	cytosol	34.89	20.41

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:AAK94429	ProteinID:AAK94429.1	EMBL:AF398148
EnsemblPlantsGene:Bra031605	EnsemblPlants:Bra031605.1	EnsemblPlants:Bra031605.1-P	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:IPR000795	UniProt:M4ES27	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230
SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf
InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0002543375	SEG:seg	:

Description

AT5G60390 (E=1e-200) | elongation factor 1-alpha / EF-1-alpha

Coordinates

chrA09:-:35624380..35625827

Molecular Weight (calculated)

46800.8 Da

IEP (calculated)

9.682

GRAVY (calculated)

-0.321

Length

427 amino acids

Sequence
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAELIDA PGHRDFIKNM ITGTSQADCA VLIIDSTTGG
101: FEAGISKDGQ TREHALLAFT LGVKQMICCC NKMDATTPKY SKARYDEIIK EVSSYLKKVG YNPDKIPFVP ISGFEGDNMI ERSTNLDWYK GPTLLEALDQ
201: INEPKRPSDK PLRLPLQDVY KIGGIGTVPV GRVETGMLKP GMVVTFAPSG LTTEVKSVEM HHESLVEALP GDNVGFNVKN VAVKDLKRGY VASNSKDDPA
301: KGAANFTSQV IIMNHPGQIG NGYAPVLDCH TSHIAVKFSE ILTKIDRRSG KEIEKEPKFL KNGDAGMVKM TPTKPMVVET FSEYPPLGRF AVRDMRQTVA
401: VGVIKSVDKK DPTGAKVTKA AVKKGAK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.