Factsheet for GSMUA_Achr6P02020_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07920.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G07930.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P24440_001	Banana	cytosol	36.42	99.21
GSMUA_Achr2P19000_001	Banana	cytosol	21.97	98.7
HORVU5Hr1G051280.1	Barley	cytosol	29.19	97.12
CDY09214	Canola	cytosol	44.8	96.88
Bra031601.1-P	Field mustard	cytosol	54.34	94.95
Zm00001d037882_P001	Maize	cytosol	50.58	94.59
OQU75582	Sorghum	cytosol	33.53	92.8
Zm00001d009887_P001	Maize	cytosol	37.86	89.73
GSMUA_Achr10P...	Banana	cytosol, plastid	52.6	84.65
OQU75597	Sorghum	cytosol	41.91	82.86
CDY06287	Canola	cytosol	53.47	81.5
CDY06289	Canola	cytosol	55.78	75.39
CDY67375	Canola	cytosol	57.51	71.58
GSMUA_Achr3P17840_001	Banana	cytosol	30.64	69.74
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	20.52	66.98
GSMUA_AchrUn_...	Banana	cytosol	34.1	56.46
Bra031602.1-P	Field mustard	cytosol	69.65	53.67
Bra002483.1-P	Field mustard	cytosol	69.65	53.67
Bra018669.1-P	Field mustard	cytosol	69.65	53.67
Bra006661.1-P	Field mustard	cytosol	69.65	53.67
PGSC0003DMT400050663	Potato	cytosol	69.08	53.47
Zm00001d036904_P001	Maize	cytosol	69.08	53.47
KXG20293	Sorghum	cytosol	69.08	53.47
KXG20294	Sorghum	cytosol	69.08	53.47
VIT_08s0040g02330.t01	Wine grape	cytosol	69.08	53.47
KXG20296	Sorghum	cytosol	69.08	53.47
KXG20299	Sorghum	cytosol	69.08	53.47
Os03t0177400-01	Rice	cytosol	69.08	53.47
Os03t0177500-01	Rice	cytosol	69.08	53.47
Os03t0177900-01	Rice	plasma membrane	69.08	53.47
Os03t0178000-02	Rice	cytosol	69.08	53.47
Solyc11g069700.1.1	Tomato	nucleus	69.08	53.47
AT1G07930.1	Thale cress	cytosol	69.36	53.45
AT1G07920.1	Thale cress	cytosol	69.36	53.45
AT1G07940.3	Thale cress	cytosol	69.36	53.45
AT5G60390.2	Thale cress	cytosol	69.36	53.45
Bra018242.1-P	Field mustard	cytosol	69.36	53.45
Bra020253.1-P	Field mustard	cytosol	69.36	53.45
CDX88757	Canola	cytosol	61.56	53.12
Zm00001d046449_P003	Maize	cytosol	68.5	53.02
TraesCS5A01G415600.1	Wheat	cytosol	68.5	53.02
TraesCS5A01G415400.1	Wheat	cytosol	68.5	53.02
TraesCS4A01G107700.1	Wheat	cytosol	68.5	53.02
TraesCS4A01G107600.1	Wheat	cytosol	68.5	53.02
PGSC0003DMT400020968	Potato	cytosol	68.21	52.8
HORVU4Hr1G056740.1	Barley	cytosol	68.21	52.8
TraesCS4B01G196900.1	Wheat	golgi	68.21	52.8
TraesCS5B01G418100.1	Wheat	cytosol	68.21	52.8
TraesCS5B01G418200.1	Wheat	cytosol	68.21	52.8
PGSC0003DMT400053547	Potato	cytosol	68.21	52.68
PGSC0003DMT400053553	Potato	cytosol	68.21	52.68
PGSC0003DMT400059830	Potato	cytosol	68.21	52.68
PGSC0003DMT400059832	Potato	cytosol	68.21	52.68
Solyc06g005060.2.1	Tomato	cytosol	68.21	52.68
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	68.21	52.68
Zm00001d009868_P015	Maize	cytosol	68.21	52.33
Zm00001d009870_P008	Maize	cytosol	68.21	52.33
Zm00001d037873_P010	Maize	cytosol	68.21	52.33
Zm00001d037905_P010	Maize	cytosol	68.21	52.33
Zm00001d037875_P014	Maize	cytosol	67.92	52.11
Zm00001d037877_P014	Maize	cytosol	67.92	52.11
HORVU5Hr1G100200.3	Barley	mitochondrion	69.08	51.51
CDY10804	Canola	cytosol	63.58	51.4
CDY09211	Canola	cytosol	63.58	51.4
CDY61938	Canola	cytosol	63.58	51.4
CDY34479	Canola	cytosol	63.58	51.4
HORVU5Hr1G100700.3	Barley	plasma membrane	69.08	51.4
CDY22711	Canola	cytosol	63.01	51.05
CDY22710	Canola	cytosol	63.01	51.05
Bra031605.1-P	Field mustard	cytosol	63.01	51.05
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	59.54	50.49
HORVU4Hr1G056820.1	Barley	plasma membrane	69.08	50.21
CDX95108	Canola	cytosol, extracellular	70.52	50.1
TraesCS4B01G196800.2	Wheat	golgi	69.65	49.9
Bra020251.1-P	Field mustard	cytosol	58.96	49.51
HORVU6Hr1G085320.3	Barley	cytosol	63.01	49.43
CDX93604	Canola	cytosol	64.74	48.7
Solyc06g009960.1.1	Tomato	cytosol	57.23	48.29
HORVU6Hr1G085370.1	Barley	cytosol	63.01	48.23
GSMUA_Achr10P...	Banana	cytosol	37.28	45.74
GSMUA_Achr10P...	Banana	cytosol	36.71	45.52
GSMUA_Achr6P04090_001	Banana	cytosol	24.57	43.15
Bra030707.1-P	Field mustard	cytosol	69.65	40.85
CDY58828	Canola	cytosol	63.01	38.38
CDX70032	Canola	cytosol	33.81	34.01
HORVU4Hr1G056830.1	Barley	cytosol	23.99	28.33
GSMUA_Achr1P00050_001	Banana	cytosol	29.19	22.95
GSMUA_Achr3P07900_001	Banana	cytosol	30.35	19.77
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	15.61	17.25
GSMUA_Achr3P24830_001	Banana	mitochondrion	21.97	16.7
GSMUA_Achr8P06040_001	Banana	mitochondrion	21.68	16.48
GSMUA_Achr4P05390_001	Banana	cytosol	32.08	16.32
GSMUA_Achr9P01930_001	Banana	plastid	11.27	15.12
CDY06290	Canola	cytosol	3.76	11.3
CDY67376	Canola	cytosol	3.76	11.3
CDY06288	Canola	cytosol	3.76	11.3
CDY69678	Canola	cytosol	3.76	11.3
GSMUA_AchrUn_...	Banana	cytosol	3.18	6.01

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G02020_001	EnsemblPlants:GSMUA_Achr6P02020_001	EnsemblPlants:GSMUA_Achr6T02020_001
InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M0T3F0	InterPro:P-loop_NTPase	PFAM:PF00009	PRINTS:PR00315
ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
UniParc:UPI0002948426	SEG:seg	:	:	:	:

Description

Elongation factor 1-alpha, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G02020_001]

Coordinates

chr6:-:1307300..1309703

Molecular Weight (calculated)

38550.5 Da

IEP (calculated)

9.540

GRAVY (calculated)

-0.395

Length

346 amino acids

Sequence
(BLAST)

001: MIQRRRSCRY LHHSEPKQPG SGSSIPLLAY KYPAARVRTP LSSRHPWSRK PPPISPLLLL LSLGLCVKKL AMGKEKVHIN IVVIGHVDSG KSTTTGHLIY
101: KLGGIDKRVI ERFEKEAAEM NKRSFKYAWV LDKLKAERER GITIDIALWK FETTKYYCTV IDAPGHRDFI KNMITGTSQA DCAVLIIDST TGGFEAGISK
201: DGQTREHALL AFTLGVRQMI CCCNKMDATT PKYSKARYDE IIKEVSSYLK KVGYNPEKIP FVPISGFEGD NMIERSTNLD CPFTGILKPG MEAFPGDNAA
301: NFTSQAIRQG AGEGTQVPQE WRCRFGEDDS DKADGGRDFR RVLAAG

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.