Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400023914 | Potato | extracellular | 95.15 | 95.15 |
| Solyc05g006160.2.1 | Tomato | mitochondrion | 37.86 | 60.94 |
| VIT_18s0072g01110.t01 | Wine grape | extracellular | 59.22 | 54.46 |
| Solyc01g111080.2.1 | Tomato | nucleus | 51.46 | 50.96 |
| KRH37871 | Soybean | extracellular | 50.49 | 46.43 |
| AT1G22690.1 | Thale cress | extracellular | 51.46 | 44.54 |
| Bra024530.1-P | Field mustard | extracellular | 51.46 | 44.17 |
| CDY21382 | Canola | extracellular | 51.46 | 44.17 |
| CDY04794 | Canola | extracellular | 49.51 | 42.5 |
| CDY43288 | Canola | extracellular | 49.51 | 42.5 |
| Solyc12g089300.1.1 | Tomato | extracellular | 42.72 | 39.29 |
| Solyc02g083880.2.1 | Tomato | extracellular | 38.84 | 38.84 |
| Solyc02g083870.2.1 | Tomato | extracellular | 36.89 | 37.25 |
| Solyc03g113910.2.1 | Tomato | extracellular | 41.75 | 29.45 |
Protein Annotations
| EnsemblPlants:Solyc11g017440.1.1 | EnsemblPlantsGene:Solyc11g017440.1 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF20 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0001D6B088 | UniProt:K4D6P7 | MapMan:11.10.2.1.1 | : |
Description
No Description!
Coordinates
chr11:-:8383387..8384626
Molecular Weight (calculated)
11586.6 Da
IEP (calculated)
10.191
GRAVY (calculated)
-0.164
Length
103 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIFTLFLIF ILLIQVFANA ATEQIEAGNE GALHKKIHPI KRIHCGYACA RRCKKSSRKK VCMRACKTCC ARCKCVPPGT YGNKEVCPCY ARLRTHGNKP
101: KCP
101: KCP
001: MKKMNVVAFV TLIISFLLLS QVLAELSSSS NNETSSVSQT NDENQTAAFK RTYHHRPRIN CGHACARRCS KTSRKKVCHR ACGSCCAKCQ CVPPGTSGNT
101: ASCPCYASIR THGNKLKCP
101: ASCPCYASIR THGNKLKCP
Arabidopsis Description
GASA9Gibberellin-regulated protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWK5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.