Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g113910.2.1 | Tomato | extracellular | 74.83 | 73.29 |
| PGSC0003DMT400040298 | Potato | extracellular | 31.47 | 50.0 |
| PGSC0003DMT400004046 | Potato | extracellular | 35.66 | 49.04 |
| PGSC0003DMT400009367 | Potato | extracellular | 32.87 | 45.63 |
| PGSC0003DMT400009368 | Potato | extracellular | 32.17 | 45.1 |
| PGSC0003DMT400023914 | Potato | extracellular | 30.07 | 41.75 |
| PGSC0003DMT400075426 | Potato | extracellular | 31.47 | 39.82 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400062877 | EnsemblPlantsGene:PGSC0003DMG400024474 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF18 | PFAM:PF02704 |
| PGSC:PGSC0003DMG400024474 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0002957B6D | UniProt:M1C9P9 | MapMan:11.10.2.1.1 |
Description
Gonadotropin beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400024474]
Coordinates
chr3:+:53741278..53744424
Molecular Weight (calculated)
15668.5 Da
IEP (calculated)
9.128
GRAVY (calculated)
0.000
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MALRVLLLLV LFFATVKAQG SIIDLKEVEE DKQHVGLSQA LRLFTRGANR RLVQDIVLKV AKYLNNGDIA LAPAPAPPPS PLDCGGLCKY RCSLHSRPKL
101: CFRACGTCCV RCKCVPPGTF GNREMCGKCY TEMTTHGNKT KCP
101: CFRACGTCCV RCKCVPPGTF GNREMCGKCY TEMTTHGNKT KCP
001: MALSLLSVFI FFHVFTNVVF AASNEESNAL VSLPTPTLPS PSPATKPPSP ALKPPTPSYK PPTLPTTPIK PPTTKPPVKP PTIPVTPVKP PVSTPPIKLP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
101: PVQPPTYKPP TPTVKPPSVQ PPTYKPPTPT VKPPTTSPVK PPTTPPVQSP PVQPPTYKPP TSPVKPPTTT PPVKPPTTTP PVQPPTYNPP TTPVKPPTAP
201: PVKPPTPPPV RTRIDCVPLC GTRCGQHSRK NVCMRACVTC CYRCKCVPPG TYGNKEKCGS CYANMKTRGG KSKCP
Arabidopsis Description
GASA14Gibberellin-regulated protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.