CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0596500-02	Rice	cytosol	75.07	77.59
Os01t0116600-01	Rice	cytosol	74.04	76.64
GSMUA_Achr1P00050_001	Banana	cytosol	49.26	75.91
TraesCS2B01G465300.1	Wheat	cytosol	75.81	75.48
Zm00001d026213_P001	Maize	cytosol	92.18	75.3
TraesCS2D01G443300.1	Wheat	cytosol	75.22	75.0
TraesCS2A01G444100.1	Wheat	cytosol	74.93	74.6
HORVU2Hr1G102800.6	Barley	cytosol, plastid	75.66	67.95
Solyc12g036410.1.1	Tomato	cytosol	48.08	55.44
CDX78392	Canola	cytosol	50.88	54.94
Bra006069.1-P	Field mustard	cytosol	50.59	54.44
Solyc03g119290.2.1	Tomato	cytosol	47.05	54.25
CDY61091	Canola	cytosol	10.62	53.73
CDX70362	Canola	cytosol	50.3	52.38
VIT_03s0017g00530.t01	Wine grape	cytosol	56.93	50.79
CDX85751	Canola	cytosol	52.95	50.28
CDY40108	Canola	cytosol	52.8	49.79
AT5G10630.4	Thale cress	cytosol	53.39	48.72
EES13106	Sorghum	cytosol	49.56	47.86
Bra028577.1-P	Field mustard	cytosol	51.03	47.4
KRH42938	Soybean	cytosol	54.42	46.89
KRH59057	Soybean	cytosol	54.57	46.66
OQU75582	Sorghum	cytosol	7.96	43.2
OQU75597	Sorghum	cytosol	10.18	39.43
EER97380	Sorghum	cytosol	23.45	35.57
KXG20296	Sorghum	cytosol	23.16	35.12
KXG20299	Sorghum	cytosol	23.16	35.12
KXG20294	Sorghum	cytosol	23.16	35.12
KXG20293	Sorghum	cytosol	23.16	35.12
EES10540	Sorghum	cytosol	23.6	29.74
EER90508	Sorghum	mitochondrion	18.88	28.26
EES05366	Sorghum	plastid	17.85	25.97

Protein Annotations

MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.20.28.140	Gene3D:2.40.30.10	Gene3D:3.40.50.300	EntrezGene:8071103
UniProt:C5YF35	EnsemblPlants:EES12776	ProteinID:EES12776	ProteinID:EES12776.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	InterPro:IPR000795	InterPro:IPR001876	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF219	SMART:SM00547	EnsemblPlantsGene:SORBI_3006G200700	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540
SUPFAM:SSF90209	unigene:Sbi.5642	InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C
UniParc:UPI0001A87455	RefSeq:XP_002448448.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:-:55211317..55216494

Molecular Weight (calculated)

73271.1 Da

IEP (calculated)

7.005

GRAVY (calculated)

-0.289

Length

678 amino acids

Sequence
(BLAST)

001: MPRKVVSGPD YDDEYDDYDE YDDDDEYDEN EYANNHPVKM GKESLKKSSI TVPVHWTCSM CTFSNHESMV YCEMCGVFRE TFVKSAKDGL LKDAAVAVSS
101: EPRTSAASKI DSAKTPVKTR AADSDSDSAR KHASMSYDKA NSMRLPSAGS SLGAEKKKKT PVLSDAVPVE RIPLLASDGF QPKGNQSGGA SSSSQSDSVI
201: QKLSSDIGQL NVDKNNVNVT KPCLPEEYKP EKWMLADPES GALSQLNLAI VGHVDSGKST LSGRLLHLLG RISKKDMHKN EKESKEKGKG SFAFAWAMDE
301: SSEERERGVT MTVAVAYLET KKFRVVLLDS PGHKDFVPNM ISGATQADAA ILVIDASTGS FEAGMDGEGG KGVGQTKEHA QLVRSFGVEQ LVIAVNKMDA
401: VAYAKERFDF IKLQLGSFLR SCNFKDSAIT WIPLSAVENQ NLISAPSDAR LTSWYQGFCL LDAIDSLQLP SRDVSKPLIL PICDVIKSQS TGQLAAYGKL
501: ETGAIKNGSK VLVLPSGQEA TVKTIERDSN SCTIARAGDN VAICLQGIDG NQLIPGGVLC HPGFPVAVAN HLELKVLVLD ITTPILFGSQ VEFHIHHVKE
601: AARVTKIVAL LDRTGKPSKS APRFLKSKQN ALIQVTLDGA VCVQEFSKSR ALGRAYLRSS GRTIAVGVVN RIIGQDQN

Best Arabidopsis Sequence Match ( AT5G10630.2 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTA PFKFDAPSPD
101: DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM
201: SLIGETENSS DIKIRGPKSQ SKHKPEEWML LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER
301: ERGITMTVAV AYFNSKRHHV VLLDSPGHKD FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD
401: LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS
501: KVMVMPSGDQ GTIRSLERDS QACTIARAGD NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA
601: MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.