Factsheet for VIT_03s0017g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00050_001	Banana	cytosol	43.95	75.91
Solyc03g119290.2.1	Tomato	cytosol	48.29	62.41
Solyc12g036410.1.1	Tomato	cytosol	48.16	62.24
CDX78392	Canola	cytosol	50.39	60.99
Bra006069.1-P	Field mustard	cytosol	50.26	60.63
CDX70362	Canola	cytosol	51.71	60.37
CDX85751	Canola	cytosol	56.05	59.66
KRH42938	Soybean	cytosol	61.45	59.34
KRH59057	Soybean	cytosol	61.58	59.02
Os04t0596500-02	Rice	cytosol	50.92	58.99
Os01t0116600-01	Rice	cytosol	50.79	58.93
CDY40108	Canola	cytosol	55.66	58.83
TraesCS2D01G443300.1	Wheat	cytosol	51.58	57.65
AT5G10630.4	Thale cress	cytosol	56.32	57.6
TraesCS2B01G465300.1	Wheat	cytosol	51.58	57.56
TraesCS2A01G444100.1	Wheat	cytosol	51.58	57.56
EES12776	Sorghum	cytosol	50.79	56.93
Bra028577.1-P	Field mustard	cytosol	54.61	56.85
CDY61091	Canola	cytosol	10.0	56.72
GSMUA_Achr4P05390_001	Banana	cytosol	48.03	53.68
Os04t0677800-02	Rice	cytosol	47.63	53.08
EES13106	Sorghum	cytosol	48.82	52.85
TraesCS2A01G592500.1	Wheat	cytosol	47.24	52.41
HORVU2Hr1G102800.6	Barley	cytosol, plastid	51.18	51.52
Zm00001d001827_P005	Maize	cytosol	46.71	51.08
TraesCS2B01G591700.6	Wheat	cytosol	47.11	50.28
HORVU2Hr1G119310.19	Barley	cytosol	44.47	49.06
Zm00001d026213_P001	Maize	cytosol	51.18	46.87
TraesCS2D01G562000.1	Wheat	cytosol	47.37	44.17
VIT_19s0014g04110.t01	Wine grape	cytosol	5.92	37.19
VIT_06s0004g03240.t01	Wine grape	cytosol	20.92	35.57
VIT_08s0040g02330.t01	Wine grape	cytosol	20.66	35.12
VIT_13s0019g03920.t01	Wine grape	cytosol	20.92	34.95
VIT_17s0000g02860.t01	Wine grape	plastid	22.63	33.14
VIT_06s0004g03220.t01	Wine grape	cytosol	21.32	31.27
VIT_07s0104g00600.t01	Wine grape	mitochondrion	16.45	27.84
VIT_17s0000g09140.t01	Wine grape	cytosol	5.79	27.5
VIT_05s0029g00030.t01	Wine grape	cytosol	4.74	27.48
VIT_17s0000g09370.t01	Wine grape	plastid	16.71	26.13
VIT_14s0066g00220.t01	Wine grape	plastid	15.79	24.64
VIT_12s0034g01800.t01	Wine grape	cytosol	6.18	12.74

Protein Annotations

EntrezGene:100262342	MapMan:16.8.1.2.7	MapMan:17.3.3.1.2	Gene3D:2.40.30.10	Gene3D:3.40.50.300	ProteinID:CBI34018
ProteinID:CBI34018.3	UniProt:D7TU45	EMBL:FN596248	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0046872	InterPro:IPR000795	InterPro:IPR001876	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143
PRINTS:PR00315	ScanProsite:PS01358	PFscan:PS50199	PFscan:PS51722	PANTHER:PTHR23115	PANTHER:PTHR23115:SF219
SMART:SM00547	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	SUPFAM:SSF90209	TIGR:TC61433
InterPro:TF_GTP-bd_dom	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI0001BE45F6	ArrayExpress:VIT_03s0017g00530
EnsemblPlantsGene:VIT_03s0017g00530	EnsemblPlants:VIT_03s0017g00530.t01	RefSeq:XP_010648140.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

No Description!

Coordinates

chr3:+:15151263..15174539

Molecular Weight (calculated)

83104.4 Da

IEP (calculated)

6.584

GRAVY (calculated)

-0.332

Length

760 amino acids

Sequence
(BLAST)

001: MPRKGNYQAD YYDKDYDYED YEDYDYDLDV EENGEAVETN QETVRRGIWR CSICTFDNDE SMSACDICGV LRYPLVNIRN NNDTKTADGI CKDSGASIMA
101: KSLFAQLPHR TLKKAVIFQL QNDDVVIEES SNFQKHGNIQ GQFHEVHKAF SFHGLHHINI APFKFDVPSP DELVSNGMHA SKMASKANLT TSVSSEVPSR
201: VIDKHGLVNK QSSAKRSDRS SDLMPKGRHE NVGDRDFSES GAANTESSAK GSDSSSMLMP KGRNNSKDES NISSIDKNKR QSISGNLLSS MTLNVKSEHS
301: KSSSAGKSVS DVHYKPEKWM IPDQENDVLT QLNLAIVGHV DSGKSTLSGR LLHLLGRISQ KEMHKYEKEA KLQGKGSFAY AWALDESTEE RERGITMTVA
401: VAYFDSKKYH VVVLDSPGHK DFVPNMISGA TQADSAILVI DASIGAFEAG VDSTGGQTRE HAQLIRSFGV DQIIVAVNKM DAVEYSKERF DFIKMQLGTF
501: LRSCGFKDSS VSWIPLSAME NQNLVEAASD ARLSSWYQGP YLLDAIDSLQ PPTRDFSKPL LMPICDVIKP SSSGQVSACG KLEAGALRSG FKVLVMPSGD
601: VATVRSLERD SQTCAIARAG DNVAVCLQGI DGSNVMAGGV LCQPDFPVAV ATRLELKVLV LDIKTPILMG SQLEFHTHHS KEAATIVKIL SLLDPKTGKV
701: TKTAPRCVTA KQSAVLEVAL SGAVCVEEFS NCRALGRAFL RAMGRTLAVG IVTRVIKDHE

Best Arabidopsis Sequence Match ( AT5G10630.3 )
(BLAST)

001: MPRKGLSNFD DYDDGFDDDD DAFDYDYDVD IDEHEEEAAA EPKEEIAKTQ GLWRCAICTY DNVETMFVCD ICGVLRHPVA GNQSINKNTV ESRCKEPVVS
101: KLAKSLFGSV PSNKPKRAVL CLPEHTNLVM EQGPLPGISR GNIHDLYKAF SSKNSCVSIA PFKFDAPSPD DLVSNGLTSS KTGPKGSGDA SMRQKEKQDS
201: VEQKPLKKGG DSSETSSRGR HDKLDDKGGA GGIKSGKSLP KAKADMSNET SSSSKYMETS ESLTGTMNKM SLIGETENSS DIKIRGPKSQ SKHKPEEWML
301: LDKESDALSQ LNLAIVGHVD SGKSTLSGRL LHLLGRISQK QMHKYEKEAK LQGKGSFAYA WALDESAEER ERGITMTVAV AYFNSKRHHV VLLDSPGHKD
401: FVPNMIAGAT QADAAILVID ASVGAFEAGF DNLKGQTREH ARVLRGFGVE QVIVAINKMD IVGYSKERFD LIKQHVGSFL QSCRFKDSSL TWIPLSAMEN
501: QNLVAAPSDN RLSSWYQGPC LLDAVDSVKS PDRDVSKPLL MPICDAVRST SQGQVSACGK LEAGAVRPGS KVMVMPSGDQ GTIRSLERDS QACTIARAGD
601: NVALALQGID ANQVMAGDVL CHPDFPVSVA THLELMVLVL EGATPILLGS QLEFHVHHAK EAATVVKLVA MLDPKTGQPT KKSPRCLTAK QSAMLEVSLQ
701: NPVCVETFSE SRALGRVFLR SSGRTVAMGK VTRIIQDS

Arabidopsis Description

Translation elongation factor EF1A/initiation factor IF2gamma family protein [Source:TAIR;Acc:AT5G10630]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.