Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | CDY37482 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | CDY51733 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | CDY51734 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | CDY55133 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36540 | Canola | mitochondrion | 83.61 | 84.07 |
| Bra026775.1-P | Field mustard | mitochondrion | 77.05 | 76.22 |
| AT1G15260.1 | Thale cress | mitochondrion | 62.84 | 64.61 |
| CDY50621 | Canola | mitochondrion, nucleus | 17.49 | 34.04 |
| CDX97719 | Canola | mitochondrion | 22.4 | 26.97 |
| CDY30132 | Canola | mitochondrion, plastid | 21.86 | 26.32 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 25.68 | 25.82 |
| KRH44358 | Soybean | mitochondrion | 22.95 | 25.15 |
| KRH09868 | Soybean | mitochondrion | 28.96 | 24.42 |
| KRH23447 | Soybean | mitochondrion | 27.87 | 23.61 |
| PGSC0003DMT400006511 | Potato | cytosol | 27.87 | 22.27 |
| PGSC0003DMT400089587 | Potato | cytosol | 27.87 | 22.27 |
| Solyc03g120790.1.1 | Tomato | nucleus | 27.87 | 22.27 |
| KRH47035 | Soybean | mitochondrion | 24.59 | 21.03 |
Protein Annotations
| EnsemblPlants:CDY39626 | EnsemblPlantsGene:GSBRNA2T00068192001 | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 | ProteinID:CDY39626 | ProteinID:CDY39626.1 |
| SEG:seg | UniParc:UPI0004EDDFD1 | UniProt:A0A078HPV5 | MapMan:35.2 | : | : |
Description
BnaC05g11550DBnaC05g11550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPV5]
Coordinates
chrLK032453:+:144135..144750
Molecular Weight (calculated)
20776.8 Da
IEP (calculated)
10.056
GRAVY (calculated)
-0.698
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKPSAKSIQ RVGRFLRKSL GSIKSTVCFG KHHNFSNNST PLLSPFSCSL SHPCPQDSQT EETYSVISCE SKVVADTRDE RLINKSQHKK KPKKKVAAEP
101: FEEAKRRGDM LAQKMKNLNM VDLRDVEHAS DVKEALRCYS SIRSPVYLDI VDNFFTDMYY EFSDPRTSSG INGSRRKAGS FRV
101: FEEAKRRGDM LAQKMKNLNM VDLRDVEHAS DVKEALRCYS SIRSPVYLDI VDNFFTDMYY EFSDPRTSSG INGSRRKAGS FRV
001: MMKPTSKSIQ RVGRFLKKTL GSIKSTICSS DYKNLPNDTP LLSPYSCSRR CPEDSQTQTK ESYTVICCDT AVADTTHQKS LNNQHKKKPK KVAEPFEDAK
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VY60]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.