Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006409 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | PGSC0003DMT400006409 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089587 | Potato | cytosol | 46.15 | 36.68 |
| PGSC0003DMT400006511 | Potato | cytosol | 46.15 | 36.68 |
| CDY50621 | Canola | mitochondrion, nucleus | 18.13 | 35.11 |
| KRH44358 | Soybean | mitochondrion | 31.87 | 34.73 |
| CDX97719 | Canola | mitochondrion | 26.37 | 31.58 |
| KRH47035 | Soybean | mitochondrion | 36.26 | 30.84 |
| Bra027193.1-P | Field mustard | mitochondrion, plastid | 25.27 | 30.26 |
| CDY30132 | Canola | mitochondrion, plastid | 25.27 | 30.26 |
| KRH23447 | Soybean | mitochondrion | 35.16 | 29.63 |
| AT3G16070.1 | Thale cress | mitochondrion | 24.18 | 29.33 |
| KRH09868 | Soybean | mitochondrion | 34.62 | 29.03 |
| PGSC0003DMT400056815 | Potato | mitochondrion | 23.08 | 28.38 |
| AT1G15260.1 | Thale cress | mitochondrion | 26.37 | 26.97 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 25.82 | 25.68 |
| CDY36540 | Canola | mitochondrion | 25.27 | 25.27 |
| Bra026151.1-P | Field mustard | mitochondrion | 25.27 | 25.27 |
| Bra026775.1-P | Field mustard | mitochondrion | 25.27 | 24.86 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042550 | EnsemblPlantsGene:PGSC0003DMG400016506 | EntrezGene:102579339 | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 | PGSC:PGSC0003DMG400016506 |
| RefSeq:XP_006356158.2 | SEG:seg | UniParc:UPI000295B4ED | UniProt:M1BD86 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016506]
Coordinates
chr6:+:49321875..49322960
Molecular Weight (calculated)
22158.7 Da
IEP (calculated)
8.048
GRAVY (calculated)
-0.769
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKVYRKPQM LFKKTFQKTK NLFLKTLHNL NSFLFKSHHK LPKVCHFNPF FSRSNRIPNS IIQELDDFYR DFPQQWECSN QNEVPQRKNI REESVNNTMK
101: EQREKMEDAF LRNTSKGEVL VQKMKELEMM DEEDLDQMMD IKEVLYYYSY LKCPVYLDIV DRYFMDMYNE LSLPQTFINV NS
101: EQREKMEDAF LRNTSKGEVL VQKMKELEMM DEEDLDQMMD IKEVLYYYSY LKCPVYLDIV DRYFMDMYNE LSLPQTFINV NS
001: MFQKTNSFFH RTLHSLKSII IRAGKKLPRP KTHFSCTFCR SNSLDGDNIY ASFLNIWESD LENSIEGPLK LEHKVQEQEQ YHQVKKTEAC SSYSSRDCDT
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LW80]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.