Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 5
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026775.1-P | Field mustard | mitochondrion | 66.29 | 63.78 |
| Bra026151.1-P | Field mustard | mitochondrion | 65.17 | 63.74 |
| CDY36540 | Canola | mitochondrion | 65.17 | 63.74 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 64.61 | 62.84 |
| AT3G16070.1 | Thale cress | mitochondrion | 24.72 | 29.33 |
| KRH23447 | Soybean | mitochondrion | 32.58 | 26.85 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 26.97 | 26.37 |
| KRH44358 | Soybean | mitochondrion | 24.72 | 26.35 |
| KRH09868 | Soybean | mitochondrion | 32.02 | 26.27 |
| PGSC0003DMT400006511 | Potato | cytosol | 32.02 | 24.89 |
| PGSC0003DMT400089587 | Potato | cytosol | 32.02 | 24.89 |
| Solyc03g120790.1.1 | Tomato | nucleus | 30.9 | 24.02 |
| KRH47035 | Soybean | mitochondrion | 27.53 | 22.9 |
Protein Annotations
| MapMan:35.2 | EntrezGene:838093 | UniProt:A0A178W9C8 | ProteinID:AEE29296.1 | ArrayExpress:AT1G15260 | EnsemblPlantsGene:AT1G15260 |
| RefSeq:AT1G15260 | TAIR:AT1G15260 | RefSeq:AT1G15260-TAIR-G | EnsemblPlants:AT1G15260.1 | TAIR:AT1G15260.1 | EMBL:AY072425 |
| EMBL:AY086992 | EMBL:AY114709 | Unigene:At.43296 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0008150 | GO:GO:0016787 | RefSeq:NP_563968.1 | ProteinID:OAP13983.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 | UniProt:Q8VY60 | UniParc:UPI000009CC2F |
Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VY60]
Coordinates
chr1:+:5249760..5250573
Molecular Weight (calculated)
20273.2 Da
IEP (calculated)
9.703
GRAVY (calculated)
-0.763
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKPTSKSIQ RVGRFLKKTL GSIKSTICSS DYKNLPNDTP LLSPYSCSRR CPEDSQTQTK ESYTVICCDT AVADTTHQKS LNNQHKKKPK KVAEPFEDAK
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.