Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g121460.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | Solyc03g121460.1.1 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006511 | Potato | cytosol | 93.45 | 93.45 |
| PGSC0003DMT400089587 | Potato | cytosol | 93.45 | 93.45 |
| CDY50621 | Canola | mitochondrion, nucleus | 16.16 | 39.36 |
| KRH44358 | Soybean | mitochondrion | 25.33 | 34.73 |
| KRH09868 | Soybean | mitochondrion | 31.88 | 33.64 |
| CDX97719 | Canola | mitochondrion | 21.83 | 32.89 |
| CDY30132 | Canola | mitochondrion, plastid | 21.83 | 32.89 |
| Bra027193.1-P | Field mustard | mitochondrion, plastid | 21.4 | 32.24 |
| KRH23447 | Soybean | mitochondrion | 29.69 | 31.48 |
| AT3G16070.1 | Thale cress | mitochondrion | 20.52 | 31.33 |
| AT1G15260.1 | Thale cress | mitochondrion | 24.02 | 30.9 |
| KRH47035 | Soybean | mitochondrion | 28.38 | 30.37 |
| Bra026775.1-P | Field mustard | mitochondrion | 23.14 | 28.65 |
| Bra026151.1-P | Field mustard | mitochondrion | 22.71 | 28.57 |
| CDY36540 | Canola | mitochondrion | 22.71 | 28.57 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 22.27 | 27.87 |
Protein Annotations
| EnsemblPlants:Solyc03g120790.1.1 | EnsemblPlantsGene:Solyc03g120790.1 | InterPro:IPR006458 | InterPro:Ovate_C | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 |
| PFscan:PS51754 | SEG:seg | UniParc:UPI0002766F41 | UniProt:K4BMM8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr3:+:69063513..69064202
Molecular Weight (calculated)
27054.5 Da
IEP (calculated)
9.187
GRAVY (calculated)
-0.868
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESYKKIEP QMLLKKTIQK TKNFLYRTPH NLKSFLFGGH HKLPKTACHF NPFLSVSKRF SSSKRIPKTN VKELDDLYRD YYQQWNQPDH NEIQERKMTS
101: KNARKFQGMA EGDYSESQRE LAVRFGMEDI ESERRKEDEK KGREVLTRST SKGSLTLLKK MEELEMVEGE DMDHVLDIEE VLQCYTLLNS PVYVDIVDRF
201: FMDMYTEFSI RKPSGSVNSS MRRLGPLKL
101: KNARKFQGMA EGDYSESQRE LAVRFGMEDI ESERRKEDEK KGREVLTRST SKGSLTLLKK MEELEMVEGE DMDHVLDIEE VLQCYTLLNS PVYVDIVDRF
201: FMDMYTEFSI RKPSGSVNSS MRRLGPLKL
001: MMKPTSKSIQ RVGRFLKKTL GSIKSTICSS DYKNLPNDTP LLSPYSCSRR CPEDSQTQTK ESYTVICCDT AVADTTHQKS LNNQHKKKPK KVAEPFEDAK
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VY60]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.