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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 4
  • cytosol 1
  • nucleus 1
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:cytosol
MultiLoc:plastid
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30132 Canola mitochondrion, plastid 98.68 98.68
CDX97719 Canola mitochondrion 97.37 97.37
AT3G16070.1 Thale cress mitochondrion 80.92 82.0
KRH44358 Soybean mitochondrion 31.58 28.74
PGSC0003DMT400042550 Potato mitochondrion 30.26 25.27
KRH23447 Soybean mitochondrion 34.87 24.54
KRH09868 Soybean mitochondrion 34.87 24.42
KRH47035 Soybean mitochondrion 32.24 22.9
Bra026151.1-P Field mustard mitochondrion 25.66 21.43
Solyc03g120790.1.1 Tomato nucleus 32.24 21.4
Bra026775.1-P Field mustard mitochondrion 25.66 21.08
PGSC0003DMT400006511 Potato cytosol 31.58 20.96
PGSC0003DMT400089587 Potato cytosol 31.58 20.96
Protein Annotations
EnsemblPlants:Bra027193.1EnsemblPlants:Bra027193.1-PEnsemblPlantsGene:Bra027193PANTHER:PTHR35461PANTHER:PTHR35461:SF1UniParc:UPI000254792D
UniProt:M4EEI1MapMan:35.2::::
Description
AT3G16070 (E=2e-067) | unknown protein
Coordinates
chrA05:+:19611549..19612007
Molecular Weight (calculated)
17616.9 Da
IEP (calculated)
7.981
GRAVY (calculated)
-0.649
Length
152 amino acids
Sequence
(BLAST)
001: MFQKTNSFFH RTLHSLKSII LRAGKKLSKP KTHFSCTFCR SNSLDGDDFY ASFLNIWESD LKNSIGGGGP LKLEQKTQEH VQDHQEKKTE ACSSRLSRDC
101: DKMEKKIKEM YVIETGDIEQ ALDVEEALHY YSRLRSPVYL NIVDKFLNDL YA
Best Arabidopsis Sequence Match ( AT3G16070.1 )
(BLAST)
001: MFQKTNSFFH RTLHSLKSII IRAGKKLPRP KTHFSCTFCR SNSLDGDNIY ASFLNIWESD LENSIEGPLK LEHKVQEQEQ YHQVKKTEAC SSYSSRDCDT
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LW80]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.