CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10001
KRH23330
KRH44167
KRH47141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15260.1	KRH10001	AT3G13720.1	21798944
AT1G15260.1	KRH23330	AT3G13720.1	21798944
AT1G15260.1	KRH44167	AT3G13720.1	21798944
AT1G15260.1	KRH47141	AT3G13720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09868	Soybean	mitochondrion	84.72	84.33
KRH44358	Soybean	mitochondrion	42.13	54.49
KRH47035	Soybean	mitochondrion	49.54	50.0
CDY50621	Canola	mitochondrion, nucleus	18.98	43.62
AT3G16070.1	Thale cress	mitochondrion	25.93	37.33
CDX97719	Canola	mitochondrion	25.0	35.53
PGSC0003DMT400042550	Potato	mitochondrion	29.63	35.16
CDY30132	Canola	mitochondrion, plastid	24.54	34.87
Bra027193.1-P	Field mustard	mitochondrion, plastid	24.54	34.87
KRH41575	Soybean	nucleus	34.26	33.33
AT1G15260.1	Thale cress	mitochondrion	26.85	32.58
KRH60284	Soybean	nucleus, plastid	32.41	31.53
CDY36540	Canola	mitochondrion	25.93	30.77
Bra026151.1-P	Field mustard	mitochondrion	25.93	30.77
Bra026775.1-P	Field mustard	mitochondrion	25.93	30.27
PGSC0003DMT400006511	Potato	cytosol	31.48	29.69
PGSC0003DMT400089587	Potato	cytosol	31.48	29.69
Solyc03g120790.1.1	Tomato	nucleus	31.48	29.69
CDY39626	Canola	mitochondrion, nucleus, plastid	23.61	27.87
KRH48392	Soybean	mitochondrion	30.56	27.62
KRH39286	Soybean	plastid	30.56	27.16

Protein Annotations

EMBL:ACUP02008465	EnsemblPlants:KRH23447	EnsemblPlantsGene:GLYMA_13G358000	EntrezGene:100810429	PANTHER:PTHR35461	PANTHER:PTHR35461:SF1
ProteinID:KRH23447	ProteinID:KRH23447.1	SEG:seg	UniParc:UPI00023CF89B	UniProt:I1M5K5	MapMan:35.2

Description

hypothetical protein

Coordinates

chr13:+:44581701..44582750

Molecular Weight (calculated)

24971.7 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.745

Length

216 amino acids

Sequence
(BLAST)

001: MLLRETIRKT RVLFHKTLRS FKSVIFGGYQ KLPRSLSFNP FVGRSGNART YTSEQFYNEF YDMLQSDLNR IKRSDSNSMS RSREHAIGDA VNTEILRKQS
101: SQKSIAEEGV VVEEKKNKGS CEMGKKECLN NSKSMNEGVH DLAEKMKELE MMDTGDVEHE LDIEEALHYY SRLKSPVYLD IVDKFFMDMH SEFSVQESSI
201: SVKRSKSKGR PDSIRL

Best Arabidopsis Sequence Match ( AT3G16070.1 )
(BLAST)

001: MFQKTNSFFH RTLHSLKSII IRAGKKLPRP KTHFSCTFCR SNSLDGDNIY ASFLNIWESD LENSIEGPLK LEHKVQEQEQ YHQVKKTEAC SSYSSRDCDT
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS

Arabidopsis Description

LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LW80]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.