Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- nucleus 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | KRH10001 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | KRH23330 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | KRH44167 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | KRH47141 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23447 | Soybean | mitochondrion | 84.33 | 84.72 |
| KRH44358 | Soybean | mitochondrion | 44.24 | 57.48 |
| KRH47035 | Soybean | mitochondrion | 51.61 | 52.34 |
| CDY50621 | Canola | mitochondrion, nucleus | 18.89 | 43.62 |
| AT3G16070.1 | Thale cress | mitochondrion | 25.35 | 36.67 |
| CDX97719 | Canola | mitochondrion | 24.88 | 35.53 |
| CDY30132 | Canola | mitochondrion, plastid | 24.42 | 34.87 |
| Bra027193.1-P | Field mustard | mitochondrion, plastid | 24.42 | 34.87 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 29.03 | 34.62 |
| KRH41575 | Soybean | nucleus | 33.18 | 32.43 |
| KRH60284 | Soybean | nucleus, plastid | 33.18 | 32.43 |
| AT1G15260.1 | Thale cress | mitochondrion | 26.27 | 32.02 |
| PGSC0003DMT400006511 | Potato | cytosol | 33.64 | 31.88 |
| PGSC0003DMT400089587 | Potato | cytosol | 33.64 | 31.88 |
| Solyc03g120790.1.1 | Tomato | nucleus | 33.64 | 31.88 |
| CDY36540 | Canola | mitochondrion | 26.73 | 31.87 |
| Bra026151.1-P | Field mustard | mitochondrion | 26.73 | 31.87 |
| Bra026775.1-P | Field mustard | mitochondrion | 26.27 | 30.81 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 24.42 | 28.96 |
| KRH48392 | Soybean | mitochondrion | 30.88 | 28.03 |
| KRH39286 | Soybean | plastid | 29.03 | 25.93 |
Protein Annotations
| EMBL:ACUP02009112 | EnsemblPlants:KRH09868 | EnsemblPlantsGene:GLYMA_15G015400 | EntrezGene:100802301 | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 |
| ProteinID:KRH09868 | ProteinID:KRH09868.1 | SEG:seg | UniParc:UPI000233C137 | UniProt:I1MCP6 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr15:-:1216449..1217617
Molecular Weight (calculated)
24879.7 Da
IEP (calculated)
9.785
GRAVY (calculated)
-0.648
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRETIRKT RVLFHKTLRS FKSVIFGGYQ KLPRSLSFNP FLGRSGNART YTSEQFYNEF YDMLQSDLNR IKRSDSNSMN RSRDHAIGDA AANTEILTKQ
101: SSQKSIAEEG VVLKEKKSKG SCELGKKECL NNSKSINEGV HDLTQKMKEL EMMDTGDVEH VLDIEEALHY YSRLKSPVYL DIVDKFFMDM HSEFSVQDSS
201: ISVKRSKSKG RLGSIRL
101: SSQKSIAEEG VVLKEKKSKG SCELGKKECL NNSKSINEGV HDLTQKMKEL EMMDTGDVEH VLDIEEALHY YSRLKSPVYL DIVDKFFMDM HSEFSVQDSS
201: ISVKRSKSKG RLGSIRL
001: MFQKTNSFFH RTLHSLKSII IRAGKKLPRP KTHFSCTFCR SNSLDGDNIY ASFLNIWESD LENSIEGPLK LEHKVQEQEQ YHQVKKTEAC SSYSSRDCDT
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LW80]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.