Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30132 | Canola | mitochondrion, plastid | 79.79 | 49.34 |
| CDX97719 | Canola | mitochondrion | 77.66 | 48.03 |
| AT3G16070.1 | Thale cress | mitochondrion | 73.4 | 46.0 |
| KRH44358 | Soybean | mitochondrion | 36.17 | 20.36 |
| KRH23447 | Soybean | mitochondrion | 43.62 | 18.98 |
| KRH09868 | Soybean | mitochondrion | 43.62 | 18.89 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 35.11 | 18.13 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 34.04 | 17.49 |
| KRH47035 | Soybean | mitochondrion | 39.36 | 17.29 |
| CDY36540 | Canola | mitochondrion | 32.98 | 17.03 |
| Solyc03g120790.1.1 | Tomato | nucleus | 39.36 | 16.16 |
| PGSC0003DMT400006511 | Potato | cytosol | 38.3 | 15.72 |
| PGSC0003DMT400089587 | Potato | cytosol | 38.3 | 15.72 |
Protein Annotations
| EnsemblPlants:CDY50621 | EnsemblPlantsGene:GSBRNA2T00097162001 | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 | ProteinID:CDY50621 | ProteinID:CDY50621.1 |
| UniParc:UPI0004EE751D | UniProt:A0A078IKT7 | MapMan:35.2 | : | : | : |
Description
BnaC01g44230DBnaC01g44230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKT7]
Coordinates
chrLK032927:+:52212..52645
Molecular Weight (calculated)
11235.4 Da
IEP (calculated)
9.617
GRAVY (calculated)
-0.878
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MFQKTNSFFH RTLHSLKLTK AEQKHEQEKK TEACSSRSPR DCNRMEKKIK KMYVTETGDI EKALDVEEAL YYYSRLRSQV YLNIVGKFFN DLYA
001: MFQKTNSFFH RTLHSLKSII IRAGKKLPRP KTHFSCTFCR SNSLDGDNIY ASFLNIWESD LENSIEGPLK LEHKVQEQEQ YHQVKKTEAC SSYSSRDCDT
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LW80]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.