Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006409 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | PGSC0003DMT400006409 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089587 | Potato | cytosol | 100.0 | 100.0 |
| Solyc03g120790.1.1 | Tomato | nucleus | 93.45 | 93.45 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 36.68 | 46.15 |
| CDY50621 | Canola | mitochondrion, nucleus | 15.72 | 38.3 |
| KRH44358 | Soybean | mitochondrion | 25.33 | 34.73 |
| KRH09868 | Soybean | mitochondrion | 31.88 | 33.64 |
| PGSC0003DMT400056815 | Potato | mitochondrion | 21.4 | 33.11 |
| CDX97719 | Canola | mitochondrion | 21.4 | 32.24 |
| CDY30132 | Canola | mitochondrion, plastid | 21.4 | 32.24 |
| AT1G15260.1 | Thale cress | mitochondrion | 24.89 | 32.02 |
| Bra027193.1-P | Field mustard | mitochondrion, plastid | 20.96 | 31.58 |
| KRH23447 | Soybean | mitochondrion | 29.69 | 31.48 |
| KRH47035 | Soybean | mitochondrion | 28.82 | 30.84 |
| AT3G16070.1 | Thale cress | mitochondrion | 20.09 | 30.67 |
| Bra026775.1-P | Field mustard | mitochondrion | 23.14 | 28.65 |
| CDY36540 | Canola | mitochondrion | 22.71 | 28.57 |
| Bra026151.1-P | Field mustard | mitochondrion | 22.71 | 28.57 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 22.27 | 27.87 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006511 | EnsemblPlantsGene:PGSC0003DMG402002540 | EntrezGene:102585680 | InterPro:IPR006458 | InterPro:Ovate_C | PANTHER:PTHR35461 |
| PANTHER:PTHR35461:SF1 | PFscan:PS51754 | PGSC:PGSC0003DMG402002540 | RefSeq:XP_006343061.1 | SEG:seg | UniParc:UPI00029686DD |
| UniProt:M1DIG9 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402002540]
Coordinates
chr3:+:60129001..60131553
Molecular Weight (calculated)
27022.5 Da
IEP (calculated)
9.633
GRAVY (calculated)
-0.808
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESYNKIEP QMLLKKAIQK TKNFLYKTPH NLKSFLFGGH HKLPKTARHF NPFLSVSKRF SSSKRIPKTT VKELDDLYRD YYQQWHHPDH NEIQERKITS
101: KTARKYQGMA DGNYSESQRK LAVRFGMEDI ESERRKEDEK KGLEVLTRST SKGSLTLLKK MEELEMVEGE DMDHVLDIEE VLQCYTLLNS PVYVDIVDRF
201: FMDMYTEFSI RKPSVSVNSS MRRLGPLKL
101: KTARKYQGMA DGNYSESQRK LAVRFGMEDI ESERRKEDEK KGLEVLTRST SKGSLTLLKK MEELEMVEGE DMDHVLDIEE VLQCYTLLNS PVYVDIVDRF
201: FMDMYTEFSI RKPSVSVNSS MRRLGPLKL
001: MMKPTSKSIQ RVGRFLKKTL GSIKSTICSS DYKNLPNDTP LLSPYSCSRR CPEDSQTQTK ESYTVICCDT AVADTTHQKS LNNQHKKKPK KVAEPFEDAK
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VY60]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.