Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- nucleus 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | KRH10001 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | KRH23330 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | KRH44167 | AT3G13720.1 | 21798944 |
| AT1G15260.1 | KRH47141 | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH47035 | Soybean | mitochondrion | 70.66 | 55.14 |
| KRH09868 | Soybean | mitochondrion | 57.48 | 44.24 |
| KRH23447 | Soybean | mitochondrion | 54.49 | 42.13 |
| CDY50621 | Canola | mitochondrion, nucleus | 20.36 | 36.17 |
| CDX97719 | Canola | mitochondrion | 29.94 | 32.89 |
| AT3G16070.1 | Thale cress | mitochondrion | 29.34 | 32.67 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 34.73 | 31.87 |
| CDY30132 | Canola | mitochondrion, plastid | 28.74 | 31.58 |
| Bra027193.1-P | Field mustard | mitochondrion, plastid | 28.74 | 31.58 |
| PGSC0003DMT400006511 | Potato | cytosol | 34.73 | 25.33 |
| PGSC0003DMT400089587 | Potato | cytosol | 34.73 | 25.33 |
| Solyc03g120790.1.1 | Tomato | nucleus | 34.73 | 25.33 |
| KRH41575 | Soybean | nucleus | 33.53 | 25.23 |
| KRH60284 | Soybean | nucleus, plastid | 33.53 | 25.23 |
| AT1G15260.1 | Thale cress | mitochondrion | 26.35 | 24.72 |
| Bra026775.1-P | Field mustard | mitochondrion | 26.95 | 24.32 |
| CDY36540 | Canola | mitochondrion | 26.35 | 24.18 |
| Bra026151.1-P | Field mustard | mitochondrion | 26.35 | 24.18 |
| KRH39286 | Soybean | plastid | 34.73 | 23.87 |
| KRH48392 | Soybean | mitochondrion | 32.93 | 23.01 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 25.15 | 22.95 |
Protein Annotations
| EMBL:ACUP02004927 | EnsemblPlants:KRH44358 | EnsemblPlantsGene:GLYMA_08G205600 | EntrezGene:100791011 | PANTHER:PTHR35461 | PANTHER:PTHR35461:SF1 |
| ProteinID:KRH44358 | ProteinID:KRH44358.1 | SEG:seg | UniParc:UPI00023C6429 | UniProt:K7L7U1 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr8:+:16642379..16643004
Molecular Weight (calculated)
19769.8 Da
IEP (calculated)
9.798
GRAVY (calculated)
-0.728
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLRETFRKT KVFFSKSFQK FWSFFFGEYQ KLPRSLSFNP FLSRVGNART HTSDQLYNDM LQSDLGRTKM YGNNMSMTAM EDAQKSIHEE RAQEKKNKGK
101: KEYLSSQNMN KKAHVLAQKM KAMDMMDAGD LEHVLDIEEV LHYYSRLKSP VYLDIVDKFF KDMQSEL
101: KEYLSSQNMN KKAHVLAQKM KAMDMMDAGD LEHVLDIEEV LHYYSRLKSP VYLDIVDKFF KDMQSEL
001: MFQKTNSFFH RTLHSLKSII IRAGKKLPRP KTHFSCTFCR SNSLDGDNIY ASFLNIWESD LENSIEGPLK LEHKVQEQEQ YHQVKKTEAC SSYSSRDCDT
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
101: MEKKINEMYM TETVDIEQAL DVEEALHYYS RISSPVYLNI VDKFFTDLYS
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LW80]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.