Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15160.1 | CDY41709 | AT5G22355.1 | 21798944 |
| AT3G15160.1 | CDX80461 | AT5G24660.1 | 21798944 |
| AT3G15160.1 | CDY05402 | AT5G24660.1 | 21798944 |
| AT3G15160.1 | CDY05452 | AT5G24660.1 | 21798944 |
| AT3G15160.1 | CDY69515 | AT5G24660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82445 | Canola | cytosol | 97.69 | 97.69 |
| AT3G15160.1 | Thale cress | cytosol | 94.31 | 94.31 |
| VIT_19s0177g00260.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 75.98 | 75.04 |
| KRH55679 | Soybean | cytosol, peroxisome, plasma membrane | 72.24 | 71.86 |
| Solyc10g006410.2.1 | Tomato | cytosol | 70.11 | 69.37 |
| PGSC0003DMT400037306 | Potato | cytosol, mitochondrion, plastid | 32.74 | 66.91 |
| GSMUA_Achr3P23110_001 | Banana | cytosol, extracellular | 21.89 | 65.08 |
| PGSC0003DMT400037304 | Potato | cytosol | 23.13 | 64.04 |
| GSMUA_Achr3P23120_001 | Banana | cytosol | 45.73 | 63.3 |
| Os04t0626900-01 | Rice | plasma membrane | 64.23 | 63.11 |
| TraesCS2B01G497400.1 | Wheat | plastid | 64.06 | 62.94 |
| TraesCS2D01G473600.2 | Wheat | cytosol | 64.06 | 62.94 |
| TraesCS2A01G473900.1 | Wheat | cytosol | 63.88 | 62.76 |
| EES11468 | Sorghum | cytosol, peroxisome, plasma membrane, plastid | 62.63 | 61.43 |
| HORVU2Hr1G106960.1 | Barley | plastid | 63.7 | 59.47 |
| Zm00001d002235_P002 | Maize | cytosol, peroxisome, plasma membrane, plastid | 61.03 | 51.5 |
Protein Annotations
| EnsemblPlants:CDX75812 | EnsemblPlantsGene:GSBRNA2T00123767001 | GO:A0A078CGA0 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0016020 | GO:GO:0044599 | InterPro:AP5Z1 |
| InterPro:ARM-type_fold | PANTHER:PTHR12181 | PANTHER:PTHR12181:SF29 | PFAM:PF14764 | ProteinID:CDX75812 | ProteinID:CDX75812.1 |
| SEG:seg | SUPFAM:SSF48371 | UniParc:UPI0004EE5C45 | MapMan:22.5.5.4.1 | : | : |
Description
BnaC03g38950D
Coordinates
chrLK031805:+:872314..875618
Molecular Weight (calculated)
62412.9 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.125
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDQDGDWNY HLRILSNSAR DSTDPASDPS VIQSVKKLHG FCKLENSDDL VARIYPQINK VFQRSVASLT QSESGTSQGL LLLAILQFFL DFGDMVLHDA
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLI ENKRKLLASF PNLLSQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSILDLP MLVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPA LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKNFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDPAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLLYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV RSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSERRF PGAVNWSEGG DKMVAHIPFH ILSEQGGPPF HDFALSDVII KN
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLI ENKRKLLASF PNLLSQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSILDLP MLVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPA LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKNFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDPAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLLYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV RSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSERRF PGAVNWSEGG DKMVAHIPFH ILSEQGGPPF HDFALSDVII KN
001: MSDQEGDWDF YLRILSNSAR DSTDPASDPS ILQSVKKLHG FCKMEKSDDL VARIYPQFNK VFHRSVASLS QSESGASKGL LLLAILQFFL DFGDMVLHDS
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN
Arabidopsis Description
AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.