Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr7P15030_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15160.1 | GSMUA_Achr10P... | AT5G02150.1 | 21798944 |
| AT3G15160.1 | GSMUA_Achr7P15030_001 | AT5G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037306 | Potato | cytosol, mitochondrion, plastid | 65.61 | 45.09 |
| EES11468 | Sorghum | cytosol, peroxisome, plasma membrane, plastid | 74.6 | 24.61 |
| Os04t0626900-01 | Rice | plasma membrane | 74.07 | 24.48 |
| TraesCS2D01G473600.2 | Wheat | cytosol | 73.55 | 24.3 |
| TraesCS2A01G473900.1 | Wheat | cytosol | 73.55 | 24.3 |
| VIT_19s0177g00260.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 73.02 | 24.25 |
| TraesCS2B01G497400.1 | Wheat | plastid | 73.02 | 24.13 |
| KRH55679 | Soybean | cytosol, peroxisome, plasma membrane | 70.9 | 23.72 |
| HORVU2Hr1G106960.1 | Barley | plastid | 73.55 | 23.09 |
| Solyc10g006410.2.1 | Tomato | cytosol | 67.2 | 22.36 |
| AT3G15160.1 | Thale cress | cytosol | 65.61 | 22.06 |
| Bra001585.1-P | Field mustard | cytosol | 65.08 | 21.89 |
| CDX75812 | Canola | cytosol | 65.08 | 21.89 |
| CDX82445 | Canola | cytosol | 64.55 | 21.71 |
| Zm00001d002235_P002 | Maize | cytosol, peroxisome, plasma membrane, plastid | 67.72 | 19.22 |
| PGSC0003DMT400037304 | Potato | cytosol | 3.7 | 3.45 |
| GSMUA_Achr3P23120_001 | Banana | cytosol | 3.17 | 1.48 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P23110_001 | EnsemblPlants:GSMUA_Achr3T23110_001 | EnsemblPlantsGene:GSMUA_Achr3G23110_001 | PANTHER:PTHR12181 | PANTHER:PTHR12181:SF29 | SEG:seg |
| UniParc:UPI000294807B | UniProt:M0SH27 | MapMan:22.5.5.4.1 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G23110_001]
Coordinates
chr3:-:23923118..23925959
Molecular Weight (calculated)
21131.6 Da
IEP (calculated)
6.664
GRAVY (calculated)
0.012
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MISDYPIPFF TELALHLCWA IGEHGAGGVA YKDVARELFE NLELLLYENL LSSRLGLSQE SDIEPNNVAF RKSSQARLLC FVVTAIAKLA TCHNELLPRA
101: RVSLAKVARS RNIDRRVWRR ACDYLGLMSE PAICLSILGP STEKPKVPGI INWSEGGSKM IAHVPFYILS EQEGPPFHDF SFSDIIPEK
101: RVSLAKVARS RNIDRRVWRR ACDYLGLMSE PAICLSILGP STEKPKVPGI INWSEGGSKM IAHVPFYILS EQEGPPFHDF SFSDIIPEK
001: MEKSDDLVAR IYPQFNKVFH RSVASLSQSE SGASKGLLLL AILQFFLDFG DMVLHDSDPS LRTFFRSCLS REFSDAAVAE ATCEFLVVNQ RKLLASFPNL
101: LPQFFPLLLK LIAWNWEKLE KSFLKIFPGL ISPGSFLPLF PSIVDLPILV VALEKVERSS GSGSRVGGSI ASIQKSAAPE MLLALMDEAY TGSTIGDGGD
201: DSESEDNNTI DVADPLFLEL LKDENDGLAE RHRASPTLNA ALQAAASGPR SERMKQTLKI APRLLDVYFS VTLRDANDSL ICALIPLLMT RNSTMFPDKI
301: FSHEIRRRLL EFVLAAFQRS PNFIALLKKP IIDRLGEAYD DVAKRELALQ LCWAIGEYGG GGESHKEAAR ELFESLELLV YENLSSSRLG LRQESGNGSR
401: RTTQSRLLCF VVTAIAKLAT YHRELLPRAR VALGKVVKSR ISDARVWRRA HDYLGLMNEP GICWSVLGPS RVSEKRFPGT VNWSEGGQKM VAHIPFHILS
501: EQGGPPFHDF AFSDIIPKN
101: LPQFFPLLLK LIAWNWEKLE KSFLKIFPGL ISPGSFLPLF PSIVDLPILV VALEKVERSS GSGSRVGGSI ASIQKSAAPE MLLALMDEAY TGSTIGDGGD
201: DSESEDNNTI DVADPLFLEL LKDENDGLAE RHRASPTLNA ALQAAASGPR SERMKQTLKI APRLLDVYFS VTLRDANDSL ICALIPLLMT RNSTMFPDKI
301: FSHEIRRRLL EFVLAAFQRS PNFIALLKKP IIDRLGEAYD DVAKRELALQ LCWAIGEYGG GGESHKEAAR ELFESLELLV YENLSSSRLG LRQESGNGSR
401: RTTQSRLLCF VVTAIAKLAT YHRELLPRAR VALGKVVKSR ISDARVWRRA HDYLGLMNEP GICWSVLGPS RVSEKRFPGT VNWSEGGQKM VAHIPFHILS
501: EQGGPPFHDF AFSDIIPKN
Arabidopsis Description
AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.