Factsheet for PGSC0003DMT400037306

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400022748
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15160.1	PGSC0003DMT400022748	AT5G02150.1	21798944
AT3G15160.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT3G15160.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT3G15160.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT3G15160.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P23110_001	Banana	cytosol, extracellular	45.09	65.61
Solyc10g006410.2.1	Tomato	cytosol	98.55	47.71
VIT_19s0177g00260.t01	Wine grape	cytosol, peroxisome, plasma membrane	76.0	36.73
KRH55679	Soybean	cytosol, peroxisome, plasma membrane	72.0	35.04
Bra001585.1-P	Field mustard	cytosol	66.91	32.74
CDX75812	Canola	cytosol	66.91	32.74
AT3G15160.1	Thale cress	cytosol	66.55	32.56
CDX82445	Canola	cytosol	66.18	32.38
TraesCS2B01G497400.1	Wheat	plastid	66.18	31.82
TraesCS2D01G473600.2	Wheat	cytosol	66.18	31.82
Os04t0626900-01	Rice	plasma membrane	65.82	31.64
TraesCS2A01G473900.1	Wheat	cytosol	65.45	31.47
EES11468	Sorghum	cytosol, peroxisome, plasma membrane, plastid	65.45	31.41
HORVU2Hr1G106960.1	Barley	plastid	65.45	29.9
Zm00001d002235_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	60.73	25.08
GSMUA_Achr3P23120_001	Banana	cytosol	22.55	15.27
PGSC0003DMT400037304	Potato	cytosol	1.09	1.48

Protein Annotations

EnsemblPlants:PGSC0003DMT400037306	EnsemblPlantsGene:PGSC0003DMG403014396	PANTHER:PTHR12181	PANTHER:PTHR12181:SF29	PGSC:PGSC0003DMG403014396	SEG:seg
UniParc:UPI000296DA64	UniProt:M1B558	MapMan:22.5.5.4.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG403014396]

Coordinates

chr10:+:1327335..1330106

Molecular Weight (calculated)

30672.5 Da

IEP (calculated)

9.539

GRAVY (calculated)

-0.098

Length

275 amino acids

Sequence
(BLAST)

001: MSDRLKQALR MTPRLLDMYT AIAIREVNDS LICALVPLLM ARYSNLFPEK LFLYEVQKRI LELMLAGFNR SPSFIALLKK PIVDRLGEAY DSPSKTELAL
101: QLCWAIGEHG GGGEAHKDAA RELFESLELL LYENLSSSRV RLRESAPGSD SAKSRKSSQS RLLCFVVTAI AKLATYHREL LPRARVSLTK VARSRISDAR
201: VWKRARDYLG LMNEPAICLS ILGPCESPSK GMQKLGTVNW SEGGTKMISH LPFYLLGAQE GPPHDFSFMD VLPGS

Best Arabidopsis Sequence Match ( AT3G15160.2 )
(BLAST)

001: MEKSDDLVAR IYPQFNKVFH RSVASLSQSE SGASKGLLLL AILQFFLDFG DMVLHDSDPS LRTFFRSCLS REFSDAAVAE ATCEFLVVNQ RKLLASFPNL
101: LPQFFPLLLK LIAWNWEKLE KSFLKIFPGL ISPGSFLPLF PSIVDLPILV VALEKVERSS GSGSRVGGSI ASIQKSAAPE MLLALMDEAY TGSTIGDGGD
201: DSESEDNNTI DVADPLFLEL LKDENDGLAE RHRASPTLNA ALQAAASGPR SERMKQTLKI APRLLDVYFS VTLRDANDSL ICALIPLLMT RNSTMFPDKI
301: FSHEIRRRLL EFVLAAFQRS PNFIALLKKP IIDRLGEAYD DVAKRELALQ LCWAIGEYGG GGESHKEAAR ELFESLELLV YENLSSSRLG LRQESGNGSR
401: RTTQSRLLCF VVTAIAKLAT YHRELLPRAR VALGKVVKSR ISDARVWRRA HDYLGLMNEP GICWSVLGPS RVSEKRFPGT VNWSEGGQKM VAHIPFHILS
501: EQGGPPFHDF AFSDIIPKN

Arabidopsis Description

AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.