Factsheet for PGSC0003DMT400037304

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400022748
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15160.1	PGSC0003DMT400022748	AT5G02150.1	21798944
AT3G15160.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT3G15160.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT3G15160.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT3G15160.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006410.2.1	Tomato	cytosol	95.07	33.98
GSMUA_Achr3P23120_001	Banana	cytosol	64.04	32.02
VIT_19s0177g00260.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.92	25.66
KRH55679	Soybean	cytosol, peroxisome, plasma membrane	67.49	24.25
Bra001585.1-P	Field mustard	cytosol	65.52	23.67
CDX82445	Canola	cytosol	65.52	23.67
AT3G15160.1	Thale cress	cytosol	64.53	23.31
CDX75812	Canola	cytosol	64.04	23.13
Os04t0626900-01	Rice	plasma membrane	58.13	20.63
TraesCS2A01G473900.1	Wheat	cytosol	55.17	19.58
TraesCS2B01G497400.1	Wheat	plastid	55.17	19.58
TraesCS2D01G473600.2	Wheat	cytosol	55.17	19.58
EES11468	Sorghum	cytosol, peroxisome, plasma membrane, plastid	55.17	19.55
HORVU2Hr1G106960.1	Barley	plastid	55.66	18.77
Zm00001d002235_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	55.66	16.97
GSMUA_Achr3P23110_001	Banana	cytosol, extracellular	3.45	3.7
PGSC0003DMT400037306	Potato	cytosol, mitochondrion, plastid	1.48	1.09

Protein Annotations

EnsemblPlants:PGSC0003DMT400037304	EnsemblPlantsGene:PGSC0003DMG402014396	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0016020	GO:GO:0044599	InterPro:AP5Z1	InterPro:ARM-type_fold
PANTHER:PTHR12181	PANTHER:PTHR12181:SF29	PFAM:PF14764	PGSC:PGSC0003DMG402014396	SEG:seg	SUPFAM:SSF48371
UniParc:UPI0002958096	UniProt:M1B557	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG402014396]

Coordinates

chr10:+:1319964..1327221

Molecular Weight (calculated)

22752.3 Da

IEP (calculated)

6.496

GRAVY (calculated)

0.102

Length

203 amino acids

Sequence
(BLAST)

001: MAGEDKFKQF DFHLRSLSSS ARDSNFVTDP ASDPSVLNSV KSLCDLCRSE KSEDLIARVY PHLNRIFQRC LSSISQSQTS NGLLLLAILQ FFLDFGDVVL
101: HDADPNLRTF FKSCLSREFA DPVVAEATLD FLNANKKKFS SSFPTLLPQF FPLLLKLIAW NGEKLEKAFH RVFPGLISQG SFLPLFPSIV DFPSECVTLC
201: LSC

Best Arabidopsis Sequence Match ( AT3G15160.1 )
(BLAST)

001: MSDQEGDWDF YLRILSNSAR DSTDPASDPS ILQSVKKLHG FCKMEKSDDL VARIYPQFNK VFHRSVASLS QSESGASKGL LLLAILQFFL DFGDMVLHDS
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN

Arabidopsis Description

AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.