Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g00740.t01 | |
| VIT_16s0098g00600.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G15160.1 | VIT_08s0007g00740.t01 | AT5G02150.1 | 21798944 |
| AT3G15160.1 | VIT_16s0098g00600.t01 | AT5G24660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55679 | Soybean | cytosol, peroxisome, plasma membrane | 79.79 | 80.35 |
| PGSC0003DMT400037306 | Potato | cytosol, mitochondrion, plastid | 36.73 | 76.0 |
| CDX75812 | Canola | cytosol | 75.04 | 75.98 |
| Solyc10g006410.2.1 | Tomato | cytosol | 75.75 | 75.88 |
| AT3G15160.1 | Thale cress | cytosol | 74.87 | 75.8 |
| Bra001585.1-P | Field mustard | cytosol | 74.69 | 75.62 |
| CDX82445 | Canola | cytosol | 74.69 | 75.62 |
| GSMUA_Achr3P23110_001 | Banana | cytosol, extracellular | 24.25 | 73.02 |
| PGSC0003DMT400037304 | Potato | cytosol | 25.66 | 71.92 |
| Os04t0626900-01 | Rice | plasma membrane | 69.77 | 69.41 |
| GSMUA_Achr3P23120_001 | Banana | cytosol | 49.38 | 69.21 |
| TraesCS2D01G473600.2 | Wheat | cytosol | 69.24 | 68.88 |
| TraesCS2B01G497400.1 | Wheat | plastid | 69.07 | 68.71 |
| TraesCS2A01G473900.1 | Wheat | cytosol | 68.89 | 68.53 |
| EES11468 | Sorghum | cytosol, peroxisome, plasma membrane, plastid | 67.49 | 67.02 |
| HORVU2Hr1G106960.1 | Barley | plastid | 69.24 | 65.45 |
| Zm00001d002235_P002 | Maize | cytosol, peroxisome, plasma membrane, plastid | 64.85 | 55.41 |
Protein Annotations
| EntrezGene:100248758 | wikigene:100248758 | MapMan:22.5.5.4.1 | InterPro:AP5Z1 | ProteinID:CBI23948 | ProteinID:CBI23948.3 |
| UniProt:D7T0B9 | EMBL:FN595498 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0016020 | GO:GO:0044599 | EntrezGene:LOC100248758 | wikigene:LOC100248758 | PFAM:PF14764 | PANTHER:PTHR12181 |
| PANTHER:PTHR12181:SF29 | TIGR:TC62961 | TIGR:TC68361 | UniParc:UPI0001BE241C | ArrayExpress:VIT_19s0177g00260 | EnsemblPlantsGene:VIT_19s0177g00260 |
| EnsemblPlants:VIT_19s0177g00260.t01 | unigene:Vvi.11870 | RefSeq:XP_002281589 | RefSeq:XP_002281589.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr19:-:6105561..6115659
Molecular Weight (calculated)
63301.4 Da
IEP (calculated)
6.743
GRAVY (calculated)
-0.025
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDRDKDWEF HLRSLSATAR DSNFSADPAS DPNLLPSVRK LYELCKSEES EDLVARVYPQ INKIFQRLVA SVSQSRTSNG LLFLAILQFF LDFGEIVLHD
101: ADPSLRTFFR SCLSREFADP VVAKATLDFL IWNKKKILTS FPTLLPQFFP LLLKLIAWNG EKLEKSFLKV FPGLISPGSF LPLFPSVLDL PILVVALEKV
201: ERSSGPLIGS SIASIQKSTA PEMLLALMDE AYTGSTIGDG GGDSESEDSN AIDVADPLFF DLLKDENDGL AERHWTSPGI AAALQAAINT PQSDRLKQSL
301: NMAPRVLDMY FAIALRDVNN SLICALLPLI MTRNATIFPD KIFSYEVRKR LLEFMLAAFQ RSPDFIALLK KPIMDRLAEA YDSTAKTELA LQLCWAIGEH
401: GGGGASHGDA ARELFESLEL LLYENLSSSR LGLRQESALS SDGATFRKSS QSRLLCFVVT AIAKLATYHR ELLPRARVSL AKVARSRMSD ARVWRRAHDY
501: LGLMNEPAIC LSVLGPSRPS HGHMQNPGTV NWSEGSKKMI AHIPFYILGE QEGLPFHDFS FSDILPRRR
101: ADPSLRTFFR SCLSREFADP VVAKATLDFL IWNKKKILTS FPTLLPQFFP LLLKLIAWNG EKLEKSFLKV FPGLISPGSF LPLFPSVLDL PILVVALEKV
201: ERSSGPLIGS SIASIQKSTA PEMLLALMDE AYTGSTIGDG GGDSESEDSN AIDVADPLFF DLLKDENDGL AERHWTSPGI AAALQAAINT PQSDRLKQSL
301: NMAPRVLDMY FAIALRDVNN SLICALLPLI MTRNATIFPD KIFSYEVRKR LLEFMLAAFQ RSPDFIALLK KPIMDRLAEA YDSTAKTELA LQLCWAIGEH
401: GGGGASHGDA ARELFESLEL LLYENLSSSR LGLRQESALS SDGATFRKSS QSRLLCFVVT AIAKLATYHR ELLPRARVSL AKVARSRMSD ARVWRRAHDY
501: LGLMNEPAIC LSVLGPSRPS HGHMQNPGTV NWSEGSKKMI AHIPFYILGE QEGLPFHDFS FSDILPRRR
001: MSDQEGDWDF YLRILSNSAR DSTDPASDPS ILQSVKKLHG FCKMEKSDDL VARIYPQFNK VFHRSVASLS QSESGASKGL LLLAILQFFL DFGDMVLHDS
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN
Arabidopsis Description
AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.