Factsheet for GSMUA_Achr3P23120_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P15030_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G15160.1	GSMUA_Achr10P...	AT5G02150.1	21798944
AT3G15160.1	GSMUA_Achr7P15030_001	AT5G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037304	Potato	cytosol	32.02	64.04
VIT_19s0177g00260.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.21	49.38
KRH55679	Soybean	cytosol, peroxisome, plasma membrane	67.73	48.67
Solyc10g006410.2.1	Tomato	cytosol	64.04	45.77
Bra001585.1-P	Field mustard	cytosol	63.3	45.73
CDX75812	Canola	cytosol	63.3	45.73
CDX82445	Canola	cytosol	63.3	45.73
AT3G15160.1	Thale cress	cytosol	63.05	45.55
PGSC0003DMT400037306	Potato	cytosol, mitochondrion, plastid	15.27	22.55
GSMUA_Achr3P23110_001	Banana	cytosol, extracellular	1.48	3.17

Protein Annotations

EnsemblPlants:GSMUA_Achr3P23120_001	EnsemblPlants:GSMUA_Achr3T23120_001	EnsemblPlantsGene:GSMUA_Achr3G23120_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0016020	GO:GO:0016021	GO:GO:0044599	InterPro:AP5Z1	PANTHER:PTHR12181
PANTHER:PTHR12181:SF29	PFAM:PF14764	SEG:seg	TMHMM:TMhelix	UniParc:UPI000296D7FE	UniProt:M0SH28
MapMan:22.5.5.4.1	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G23120_001]

Coordinates

chr3:-:23925989..23939821

Molecular Weight (calculated)

45153.4 Da

IEP (calculated)

4.845

GRAVY (calculated)

0.010

Length

406 amino acids

Sequence
(BLAST)

001: MATTTTADSS RVDREKDWDF HLRSLSSNAR DSSSASDPAS DPYILQSVKK IYDIAREGGS EELVARAYPQ INKLFQRCVS ALPQSQTSNG VLLLTILQFF
101: LDFGEVVLHD ADPSLKAFFR SCLSREFADP VIAKATLDFL NLNKAKLLSS FPTLLPQFFP LLLKLIAWNG ERLEKLFMML FPAMMSIGSF LPLFHSLMDL
201: PILVASLEKV EKSSGSLIGS SIASIQKSAA PEMLLALMDE AYTGSAIEDR GGDSGSDDNN DIDVSDPVFL DILKDENDGI TERPWTSPAM TAMLQAAINN
301: TQSERLKQVL HMTPQFLALY FSIALRDVND SLLCALIPLV MSRYATTFPD KVFSHEVQKR LSDFMLAAFQ QCPKFIALLK KPITDRLGEA YDNPAKARTY
401: FIECQI

Best Arabidopsis Sequence Match ( AT3G15160.1 )
(BLAST)

001: MSDQEGDWDF YLRILSNSAR DSTDPASDPS ILQSVKKLHG FCKMEKSDDL VARIYPQFNK VFHRSVASLS QSESGASKGL LLLAILQFFL DFGDMVLHDS
101: DPSLRTFFRS CLSREFSDAA VAEATCEFLV VNQRKLLASF PNLLPQFFPL LLKLIAWNWE KLEKSFLKIF PGLISPGSFL PLFPSIVDLP ILVVALEKVE
201: RSSGSGSRVG GSIASIQKSA APEMLLALMD EAYTGSTIGD GGDDSESEDN NTIDVADPLF LELLKDENDG LAERHRASPT LNAALQAAAS GPRSERMKQT
301: LKIAPRLLDV YFSVTLRDAN DSLICALIPL LMTRNSTMFP DKIFSHEIRR RLLEFVLAAF QRSPNFIALL KKPIIDRLGE AYDDVAKREL ALQLCWAIGE
401: YGGGGESHKE AARELFESLE LLVYENLSSS RLGLRQESGN GSRRTTQSRL LCFVVTAIAK LATYHRELLP RARVALGKVV KSRISDARVW RRAHDYLGLM
501: NEPGICWSVL GPSRVSEKRF PGTVNWSEGG QKMVAHIPFH ILSEQGGPPF HDFAFSDIIP KN

Arabidopsis Description

AP-5 complex subunit zeta-1 [Source:UniProtKB/TrEMBL;Acc:Q8H1F1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.