Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88369 | Canola | nucleus, plastid | 94.89 | 96.54 |
| CDY41785 | Canola | plastid | 84.68 | 95.67 |
| AT1G77400.1 | Thale cress | nucleus | 76.17 | 77.16 |
| CDY40887 | Canola | cytosol | 57.87 | 76.4 |
| CDY38350 | Canola | cytosol | 57.45 | 75.84 |
| Bra015670.1-P | Field mustard | cytosol, plastid | 96.6 | 47.19 |
| PGSC0003DMT400015482 | Potato | cytosol | 29.36 | 45.39 |
| Solyc03g113480.1.1 | Tomato | nucleus | 34.89 | 42.93 |
| PGSC0003DMT400063159 | Potato | nucleus | 34.04 | 42.78 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 28.51 | 40.61 |
| KRH64628 | Soybean | nucleus | 29.36 | 40.35 |
| KRH53275 | Soybean | cytosol | 28.51 | 38.73 |
Protein Annotations
| EnsemblPlants:CDX87519 | EnsemblPlantsGene:GSBRNA2T00146511001 | InterPro:DUF688 | PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 | PFAM:PF05097 |
| ProteinID:CDX87519 | ProteinID:CDX87519.1 | SEG:seg | UniParc:UPI0004EF1688 | MapMan:35.2 | : |
Description
BnaA07g33540D
Coordinates
chrLK031850:-:1016936..1017824
Molecular Weight (calculated)
25751.5 Da
IEP (calculated)
11.740
GRAVY (calculated)
-0.683
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIVAAVDDS FKRPGTVPFS WEVRPGVPKT RVTQPGTGTG TGNGNAPLLQ PPKKLSPLRL KPLSHSQPLY PPALSPPSSS FISSSKSRSL SPLAPSFPTP
101: SKLKPPPPSH SGLYSPAPSF RSTPRAFSER WQLNRHDRVR PGSESEPRPD FAFAGLGCFP TPKFRLRKSK TGGRRKTGSR LDRDYCSDME TMSPWTASSR
201: RSVSPRWDSP KSSFSSLRFS PRLASEAEWV GFGLF
101: SKLKPPPPSH SGLYSPAPSF RSTPRAFSER WQLNRHDRVR PGSESEPRPD FAFAGLGCFP TPKFRLRKSK TGGRRKTGSR LDRDYCSDME TMSPWTASSR
201: RSVSPRWDSP KSSFSSLRFS PRLASEAEWV GFGLF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.