Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41785 | Canola | plastid | 71.12 | 79.33 |
| CDX88369 | Canola | nucleus, plastid | 76.72 | 77.06 |
| CDX87519 | Canola | nucleus, plastid | 77.16 | 76.17 |
| CDY38350 | Canola | cytosol | 58.19 | 75.84 |
| Bra008305.1-P | Field mustard | cytosol | 70.69 | 73.87 |
| CDY40887 | Canola | cytosol | 56.47 | 73.6 |
| PGSC0003DMT400015482 | Potato | cytosol | 30.6 | 46.71 |
| Solyc03g113480.1.1 | Tomato | nucleus | 37.5 | 45.55 |
| PGSC0003DMT400063159 | Potato | nucleus | 36.64 | 45.45 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 31.47 | 44.24 |
| KRH53275 | Soybean | cytosol | 29.74 | 39.88 |
| KRH64628 | Soybean | nucleus | 29.31 | 39.77 |
| Bra015670.1-P | Field mustard | cytosol, plastid | 76.72 | 37.01 |
Protein Annotations
| MapMan:35.2 | EntrezGene:844076 | ProteinID:AAG29198.1 | ProteinID:AEE35973.1 | EMBL:AK176875 | EMBL:AK228061 |
| ArrayExpress:AT1G77400 | EnsemblPlantsGene:AT1G77400 | RefSeq:AT1G77400 | TAIR:AT1G77400 | RefSeq:AT1G77400-TAIR-G | EnsemblPlants:AT1G77400.1 |
| TAIR:AT1G77400.1 | EMBL:BT004780 | InterPro:DUF688 | RefSeq:NP_177864.1 | PFAM:PF05097 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR35466 |
| PANTHER:PTHR35466:SF2 | UniProt:Q9FVW9 | UniParc:UPI000000C482 | SEG:seg | : | : |
Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
Coordinates
chr1:+:29085575..29086925
Molecular Weight (calculated)
25935.6 Da
IEP (calculated)
11.533
GRAVY (calculated)
-0.759
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.