Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009783.1-P | |
| Bra020466.1-P | |
| Bra036126.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G77400.1 | Bra009783.1-P | AT5G24660.1 | 21798944 |
| AT1G77400.1 | Bra020466.1-P | AT5G24660.1 | 21798944 |
| AT1G77400.1 | Bra036126.1-P | AT5G28900.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38350 | Canola | cytosol | 76.13 | 94.94 |
| CDY40887 | Canola | cytosol | 74.77 | 93.26 |
| AT1G77400.1 | Thale cress | nucleus | 73.87 | 70.69 |
| PGSC0003DMT400015482 | Potato | cytosol | 30.18 | 44.08 |
| Solyc03g113480.1.1 | Tomato | nucleus | 35.59 | 41.36 |
| PGSC0003DMT400063159 | Potato | nucleus | 34.23 | 40.64 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 29.28 | 39.39 |
| KRH64628 | Soybean | nucleus | 27.03 | 35.09 |
| KRH53275 | Soybean | cytosol | 27.03 | 34.68 |
| Bra015670.1-P | Field mustard | cytosol, plastid | 74.32 | 34.3 |
Protein Annotations
Description
AT1G77400 (E=1e-018) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 289 Blast hits to 275 proteins in 50 species: Archae - 0; Bacteria - 12; Metazoa - 127; Fungi - 25; Plants - 67; Viruses - 10; Other Eukaryotes - 48 (source: NCBI BLink).
Coordinates
chrA02:+:14607102..14607770
Molecular Weight (calculated)
24758.5 Da
IEP (calculated)
11.843
GRAVY (calculated)
-0.628
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIIVIDDSF KRPGTVPFSW EIRPGVPKTP PGNTPLLQLQ PPNYLSPLRL KPLSHSQPFL PPELSPPSSS FISKSKSRSL SPLAPSFSTP SNLKPPPPSH
101: SGFSSSGPSF RSSPRAFSER WQLNRSRSES DPRPDFAFAG LGCFPTPKFR LRKNKSSGGL RKAMSRLERG YCYDMETMSL RTVSSRRSVS LRWDSPKSSS
201: FSSLRFSPRL TNGAEWPGFR LF
101: SGFSSSGPSF RSSPRAFSER WQLNRSRSES DPRPDFAFAG LGCFPTPKFR LRKNKSSGGL RKAMSRLERG YCYDMETMSL RTVSSRRSVS LRWDSPKSSS
201: FSSLRFSPRL TNGAEWPGFR LF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.