Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64628 | Soybean | nucleus | 87.28 | 88.3 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 41.62 | 43.64 |
| PGSC0003DMT400015482 | Potato | cytosol | 36.99 | 42.11 |
| PGSC0003DMT400063159 | Potato | nucleus | 41.62 | 38.5 |
| Solyc03g113480.1.1 | Tomato | nucleus | 41.62 | 37.7 |
| CDY41785 | Canola | plastid | 35.84 | 29.81 |
| AT1G77400.1 | Thale cress | nucleus | 39.88 | 29.74 |
| CDX88369 | Canola | nucleus, plastid | 38.73 | 29.0 |
| CDX87519 | Canola | nucleus, plastid | 38.73 | 28.51 |
| CDY38350 | Canola | cytosol | 28.32 | 27.53 |
| CDY40887 | Canola | cytosol | 28.32 | 27.53 |
| Bra008305.1-P | Field mustard | cytosol | 34.68 | 27.03 |
| Bra015670.1-P | Field mustard | cytosol, plastid | 36.99 | 13.31 |
Protein Annotations
| EMBL:ACUP02003457 | EnsemblPlants:KRH53275 | EnsemblPlantsGene:GLYMA_06G115900 | EntrezGene:102670503 | PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 |
| ProteinID:KRH53275 | ProteinID:KRH53275.1 | SEG:seg | UniParc:UPI00023C26ED | UniProt:I1KAD0 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr6:-:9431013..9432053
Molecular Weight (calculated)
19500.2 Da
IEP (calculated)
11.158
GRAVY (calculated)
-0.615
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAVSVVRVD DDDGDSFKKA GAVPFKWEVK PGLPIVQQKL HHQKLESPSL KLRPPPPVGA YLLSPAEPRS RSFRSTPRDR SDRWRFKRPL LAQAESVSSG
101: CFFSPFLRRL QRRKKVPKRV FEEDYRPELE TLGRWSLSST KSLSPFRAST TSSSVASSPR PVSDAEWAGF GLF
101: CFFSPFLRRL QRRKKVPKRV FEEDYRPELE TLGRWSLSST KSLSPFRAST TSSSVASSPR PVSDAEWAGF GLF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.