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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 3
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41785 Canola plastid 86.15 95.67
CDX87519 Canola nucleus, plastid 96.54 94.89
AT1G77400.1 Thale cress nucleus 77.06 76.72
CDY40887 Canola cytosol 58.44 75.84
CDY38350 Canola cytosol 58.01 75.28
PGSC0003DMT400015482 Potato cytosol 30.74 46.71
Bra015670.1-P Field mustard cytosol, plastid 96.54 46.36
Solyc03g113480.1.1 Tomato nucleus 36.36 43.98
PGSC0003DMT400063159 Potato nucleus 35.5 43.85
VIT_18s0001g02100.t01 Wine grape nucleus 29.0 40.61
KRH64628 Soybean nucleus 29.87 40.35
KRH53275 Soybean cytosol 29.0 38.73
Protein Annotations
EnsemblPlants:CDX88369EnsemblPlantsGene:GSBRNA2T00147892001InterPro:DUF688PANTHER:PTHR35466PANTHER:PTHR35466:SF2PFAM:PF05097
ProteinID:CDX88369ProteinID:CDX88369.1SEG:segUniParc:UPI0004EDEC4FMapMan:35.2:
Description
BnaC06g38130D
Coordinates
chrLK031855:+:598064..598923
Molecular Weight (calculated)
25294.1 Da
IEP (calculated)
11.955
GRAVY (calculated)
-0.578
Length
231 amino acids
Sequence
(BLAST)
001: MAIVAAVDDS FKRPGTVPFS WEVRPGVPKT RVSQLGTGTG NAPLLQPPKK LSPLRLKPLS HSQPLLPPAL SPPSSSFISS SKSRSLSPLA PSFPTPSKLK
101: PPPPSQSGLY SPAPSFRSTP RAFSERWQLN RHDRVRPGSE SAPRPDFGFA GLGCFPTPKF RLRKSKTGGL RKTGSRLDRD YFSDMETMSP WTASSRRSVS
201: PRWDSPKSSF SSLRFSPRLA SEAEWVGFGL F
Best Arabidopsis Sequence Match ( AT1G77400.1 )
(BLAST)
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.