Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY41785 | Canola | plastid | 86.15 | 95.67 |
CDX87519 | Canola | nucleus, plastid | 96.54 | 94.89 |
AT1G77400.1 | Thale cress | nucleus | 77.06 | 76.72 |
CDY40887 | Canola | cytosol | 58.44 | 75.84 |
CDY38350 | Canola | cytosol | 58.01 | 75.28 |
PGSC0003DMT400015482 | Potato | cytosol | 30.74 | 46.71 |
Bra015670.1-P | Field mustard | cytosol, plastid | 96.54 | 46.36 |
Solyc03g113480.1.1 | Tomato | nucleus | 36.36 | 43.98 |
PGSC0003DMT400063159 | Potato | nucleus | 35.5 | 43.85 |
VIT_18s0001g02100.t01 | Wine grape | nucleus | 29.0 | 40.61 |
KRH64628 | Soybean | nucleus | 29.87 | 40.35 |
KRH53275 | Soybean | cytosol | 29.0 | 38.73 |
Protein Annotations
EnsemblPlants:CDX88369 | EnsemblPlantsGene:GSBRNA2T00147892001 | InterPro:DUF688 | PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 | PFAM:PF05097 |
ProteinID:CDX88369 | ProteinID:CDX88369.1 | SEG:seg | UniParc:UPI0004EDEC4F | MapMan:35.2 | : |
Description
BnaC06g38130D
Coordinates
chrLK031855:+:598064..598923
Molecular Weight (calculated)
25294.1 Da
IEP (calculated)
11.955
GRAVY (calculated)
-0.578
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIVAAVDDS FKRPGTVPFS WEVRPGVPKT RVSQLGTGTG NAPLLQPPKK LSPLRLKPLS HSQPLLPPAL SPPSSSFISS SKSRSLSPLA PSFPTPSKLK
101: PPPPSQSGLY SPAPSFRSTP RAFSERWQLN RHDRVRPGSE SAPRPDFGFA GLGCFPTPKF RLRKSKTGGL RKTGSRLDRD YFSDMETMSP WTASSRRSVS
201: PRWDSPKSSF SSLRFSPRLA SEAEWVGFGL F
101: PPPPSQSGLY SPAPSFRSTP RAFSERWQLN RHDRVRPGSE SAPRPDFGFA GLGCFPTPKF RLRKSKTGGL RKTGSRLDRD YFSDMETMSP WTASSRRSVS
201: PRWDSPKSSF SSLRFSPRLA SEAEWVGFGL F
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.